lmweber / Rtsne-example
Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R
☆17Updated 9 years ago
Alternatives and similar repositories for Rtsne-example
Users that are interested in Rtsne-example are comparing it to the libraries listed below
Sorting:
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆14Updated 2 years ago
- Use gene expression to predict phenotype sample information☆19Updated 7 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- ☆19Updated 7 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last week
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 7 months ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 6 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Reactome Pathway Analysis☆42Updated last month
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 5 months ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago