lmweber / Rtsne-example
Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R
☆17Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for Rtsne-example
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 5 years ago
- ☆19Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 weeks ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 5 years ago
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Genomic plot in trellis layout☆39Updated 8 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆30Updated this week
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆21Updated 5 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Updated 6 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- zero-inflated negative binomial gene expression in R☆20Updated 6 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 2 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆37Updated 6 months ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- Use gene expression to predict phenotype sample information☆19Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆14Updated last year
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago