Alternatives and similar repositories for dotplot:

Users that are interested in dotplot are comparing it to the libraries listed below

• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆46Updated 4 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated last year
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆30Updated 5 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆55Updated last week
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆65Updated 11 months ago
• molbio-dresden / flexidot
  Highly customizable, ambiguity-aware dotplots for visual sequence analyses
  ☆90Updated 4 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• fab-araujo / gofeat
  GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
  ☆17Updated 10 months ago
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆24Updated last year
• ksahlin / BESST
  BESST - scaffolder for genomic assemblies
  ☆57Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆60Updated 4 years ago
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆52Updated 3 years ago
• ridgelab / JustOrthologs
  ☆35Updated last year
• BFL-lab / Mfannot
  MFannot is a program for the annotation of mitochondrial and plastid genomes
  ☆19Updated last year
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆77Updated 6 months ago
• estebanpw / chromeister
  A dotplot generator for large chromosomes
  ☆40Updated last year
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆20Updated 5 years ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆49Updated 2 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 10 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆82Updated 2 years ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆46Updated 5 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆47Updated 5 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 4 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 6 years ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated last year
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆52Updated 3 months ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆21Updated 3 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆32Updated last month