Alternatives and similar repositories for dotplot

Users that are interested in dotplot are comparing it to the libraries listed below

• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆39Updated this week
• molbio-dresden / flexidot
  Highly customizable, ambiguity-aware dotplots for visual sequence analyses
  ☆91Updated 2 months ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated 2 years ago
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆32Updated last year
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• DrMicrobit / mira
  MIRA sequence assembler
  ☆29Updated 4 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆66Updated last year
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated 8 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆57Updated last year
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆25Updated 2 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆60Updated 5 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆58Updated 2 months ago
• SamStudio8 / reticulatus
  A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
  ☆69Updated 3 years ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆33Updated 4 years ago
• NBISweden / EMBLmyGFF3
  An efficient way to convert gff3 annotation files into EMBL format ready to submit.
  ☆59Updated last year
• ISUgenomics / SequelTools
  new repo
  ☆28Updated 4 years ago
• haessar / peaks2utr
  A robust Python tool for the annotation of 3’ UTRs
  ☆20Updated 3 months ago
• sanger-pathogens / pymummer
  Python3 module for running MUMmer and reading the output
  ☆32Updated last month
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆30Updated 6 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆59Updated 8 months ago
• bioinfo-ut / PhenotypeSeeker
  Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
  ☆19Updated last month
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆23Updated 3 years ago
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆27Updated 4 months ago
• jonathancrabtree / Circleator
  Flexible circular visualization of genome-associated data with BioPerl and SVG.
  ☆47Updated 5 years ago
• sepsis-omics / tutorials
  Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks
  ☆25Updated 11 months ago
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆45Updated 2 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated 2 months ago