NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly
☆51Dec 16, 2019Updated 6 years ago
Alternatives and similar repositories for NanoDJ
Users that are interested in NanoDJ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A public repository of scientific and media resources of SARS-CoV-2 related COVID-19☆17Dec 18, 2021Updated 4 years ago
- ☆12May 6, 2021Updated 5 years ago
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 7 months ago
- ☆36May 29, 2024Updated 2 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Trimming tool for Oxford Nanopore sequence data☆22Jun 22, 2021Updated 5 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated 2 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆20Feb 3, 2023Updated 3 years ago
- ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data☆17Jul 3, 2018Updated 8 years ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Aug 12, 2026Updated 2 months ago
- ☆27Dec 29, 2020Updated 5 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Sep 27, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11Apr 3, 2023Updated 3 years ago
- Frequently used commands in Bioinformatics☆23Apr 28, 2026Updated 6 months ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Apr 4, 2018Updated 8 years ago
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- IPython notebooks to teach Genomics and Population Genetics☆21Feb 13, 2017Updated 9 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Aug 21, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆11Oct 28, 2026Updated last week
- An Introductory Undergraduate course in Bioinformatics☆47Mar 2, 2021Updated 5 years ago
- Conversations about teaching computational skills to undergraduates☆12Sep 22, 2021Updated 5 years ago
- fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing☆10Mar 7, 2023Updated 3 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Dec 15, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Jul 22, 2024Updated 2 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Aug 30, 2022Updated 4 years ago
- Notebooks in computational metabolomics☆15Feb 3, 2025Updated last year
- ☆10Oct 10, 2020Updated 6 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 10 years ago
- assorted scripts for doing genomics☆13Nov 23, 2015Updated 10 years ago