genomicsITER / NanoDJ
NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly
☆50Updated 5 years ago
Alternatives and similar repositories for NanoDJ:
Users that are interested in NanoDJ are comparing it to the libraries listed below
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- WDL’s and Dockerfiles for assembly QC process☆66Updated 2 months ago
- Variant calling tool for long-read sequencing data☆108Updated last month
- viral-ngs: complete pipelines☆62Updated last week
- ☆48Updated 5 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆88Updated 2 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- gatk4 RNA variant calling pipeline☆46Updated last week
- seqfu - Sequece Fastx Utilities☆114Updated 3 months ago
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- ☆31Updated last week
- reference-free transcriptome assembly for short and long reads☆103Updated last year
- TIDDIT - structural variant calling☆73Updated 2 weeks ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆79Updated 2 years ago
- ☆27Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆37Updated 2 weeks ago
- List of genome assembly tools☆65Updated 3 weeks ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- Testing building mulled containers for multi-requirement tools.☆71Updated this week
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆61Updated last year
- convert various features into a GFF-like file for use in genome browsers☆70Updated 2 months ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- small RNA analysis from NGS data☆37Updated 7 months ago