genomicsITER / NanoDJLinks
NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly
☆50Updated 6 years ago
Alternatives and similar repositories for NanoDJ
Users that are interested in NanoDJ are comparing it to the libraries listed below
Sorting:
- viral-ngs: complete pipelines☆72Updated this week
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated 2 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 9 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆49Updated 5 years ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Updated 2 months ago
- Error correction for Illumina RNA-seq reads☆67Updated 3 weeks ago
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆36Updated 2 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Updated 2 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- visual analysis of your VCF files☆38Updated 3 years ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated this week
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆94Updated 2 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Updated 4 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆60Updated 6 years ago
- gatk4 RNA variant calling pipeline☆59Updated last week
- Simple bacterial assembly and annotation pipeline☆81Updated last week
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆99Updated this week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- GATK4 Best Practice Nextflow Pipeline☆33Updated 8 years ago
- Visualization of the pan-genome output by panX☆66Updated 7 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Master of Pores 2☆23Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Updated this week