lpantano / seqcluster
small RNA analysis from NGS data
☆37Updated 6 months ago
Alternatives and similar repositories for seqcluster:
Users that are interested in seqcluster are comparing it to the libraries listed below
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 9 months ago
- pipeline for the analysis of small RNA data☆14Updated 5 years ago
- Pair-End AssembeR☆31Updated 10 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- for visual evaluation of read support for structural variation☆52Updated 9 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Maximum likelihood demultiplexing☆46Updated last month
- My collection of light bioinformatics analysis pipelines for specific tasks☆73Updated 10 months ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- parallelized blat with multi-threads support☆52Updated 2 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 months ago
- BigWig and BAM utilities☆95Updated 11 months ago
- ☆78Updated 11 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- PHAST☆72Updated last week
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- A collection of command line tools for working with sequencing data☆51Updated last week
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 8 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago