small RNA analysis from NGS data
☆39Sep 6, 2024Updated last year
Alternatives and similar repositories for seqcluster
Users that are interested in seqcluster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pipeline for the analysis of small RNA data☆14Jun 24, 2019Updated 7 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Sep 17, 2019Updated 6 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Discovering known and novel miRNAs from small RNA sequencing data☆160Dec 11, 2025Updated 7 months ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆65Jun 22, 2025Updated last year
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆100Oct 23, 2025Updated 8 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆14Jul 12, 2026Updated last week
- 采用开源论坛系统Flarum建设GATK中文社区,该论坛所有帖子将以markdown代码形式发帖,所有的markdown源代码都会同步存放在此github的organization的这个project下面。GATK中文社区地址是:https://www.gatk.com.…☆17Oct 21, 2017Updated 8 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- Pipeline for universal design of target-enrichment probes from various sources of genomic data.☆29Oct 18, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆11Jun 26, 2026Updated 3 weeks ago
- ☆36Apr 17, 2025Updated last year
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Updated this week
- ☆22Sep 22, 2022Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.☆37Apr 13, 2024Updated 2 years ago
- Parallel Block GZIP☆50Aug 4, 2016Updated 9 years ago
- A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on ciphe…☆19Dec 22, 2017Updated 8 years ago
- Create multi-page HTML reports in R☆24Jun 25, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 3 months ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 6 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆90Jul 13, 2026Updated last week
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 7 years ago
- Detection of viruses from RNA-Seq on human samples☆46Mar 18, 2023Updated 3 years ago
- Genome free discovery and classification of miRNAs from small RNA-Seq with random forests☆11Jun 12, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Library for manipulating genomic variants and predicting their effects☆87Jul 9, 2026Updated last week
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆93Oct 3, 2024Updated last year
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Jun 21, 2018Updated 8 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21May 29, 2026Updated last month