lpantano / seqclusterLinks
small RNA analysis from NGS data
☆37Updated 11 months ago
Alternatives and similar repositories for seqcluster
Users that are interested in seqcluster are comparing it to the libraries listed below
Sorting:
- My bioinfo toolbox☆50Updated 6 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆57Updated 8 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 2 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 4 months ago
- Platypus Variant Caller☆108Updated last year
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆87Updated 10 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated this week
- Script to convert GTC/BPM files to VCF☆47Updated 11 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Maximum likelihood demultiplexing☆47Updated 6 months ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- ☆78Updated 11 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆71Updated last month
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Genomic Interactive Visualization Engine☆145Updated 2 years ago