lpantano / seqcluster
small RNA analysis from NGS data
☆37Updated 8 months ago
Alternatives and similar repositories for seqcluster:
Users that are interested in seqcluster are comparing it to the libraries listed below
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- pipeline for the analysis of small RNA data☆14Updated 5 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆74Updated 11 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- ☆35Updated 2 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Error correction for Illumina RNA-seq reads☆66Updated last year
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- CoGe (Comparative Genomics) Platform☆44Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 5 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 6 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 4 years ago
- ☆78Updated 11 years ago