Genomes on the Cloud, Mapping & Variant Calling Pipelines
☆33Mar 24, 2017Updated 8 years ago
Alternatives and similar repositories for gotcloud
Users that are interested in gotcloud are comparing it to the libraries listed below
Sorting:
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- Tools for early stage alignment file processing☆95Mar 12, 2019Updated 6 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Updated this week
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Sanity check Variant Call Format (VCF) files.☆37Mar 18, 2016Updated 9 years ago
- Convert genetic variants to minimal representation☆23Dec 8, 2017Updated 8 years ago
- Visualization methods for omics dataset quality control☆10Jul 17, 2025Updated 7 months ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Web application for clinical pharmacogenomic interpretation☆10Mar 3, 2017Updated 8 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 5 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆53Feb 1, 2019Updated 7 years ago
- Scripts and samples for using Grid Engine on Google Cloud Platform.☆13Aug 2, 2017Updated 8 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Search public databases for given genotypic information☆11Mar 21, 2018Updated 7 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆13Feb 19, 2026Updated last week
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 3 years ago
- Quick access to gene synonyms☆29Updated this week
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- A fast, parallel, streaming multipart uploader for S3