Genomes on the Cloud, Mapping & Variant Calling Pipelines
☆33Mar 24, 2017Updated 9 years ago
Alternatives and similar repositories for gotcloud
Users that are interested in gotcloud are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sanity check Variant Call Format (VCF) files.☆37Mar 18, 2016Updated 10 years ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Convert genetic variants to minimal representation☆23Dec 8, 2017Updated 8 years ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 9 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 9 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Mar 16, 2026Updated 3 weeks ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆58Mar 19, 2020Updated 6 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆53Feb 1, 2019Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 5 years ago
- Toolkit for QTL mapping and meta-analysis.☆17May 24, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- Web application for clinical pharmacogenomic interpretation☆10Mar 3, 2017Updated 9 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99May 21, 2024Updated last year
- Visualization methods for omics dataset quality control☆10Jul 17, 2025Updated 8 months ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Mar 30, 2026Updated last week
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Feb 20, 2018Updated 8 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Oct 29, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- FusionAnnotator source code☆16Feb 27, 2026Updated last month
- ☆31Apr 3, 2026Updated last week
- Scripts and samples for using Grid Engine on Google Cloud Platform.☆13Aug 2, 2017Updated 8 years ago
- HGVS variant name parsing and generation☆175Jun 14, 2023Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 8 years ago
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆14Feb 12, 2016Updated 10 years ago
- Gene expression in neuroexpresso database☆18Oct 25, 2024Updated last year
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Curated collection of open-source bioinformatics tools☆28Feb 5, 2019Updated 7 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Quick access to gene synonyms☆29Apr 5, 2026Updated last week
- Encore Analysis Server☆13Nov 18, 2025Updated 4 months ago
- Ultra Fast NGS Data QC Tool☆28Feb 14, 2021Updated 5 years ago
- GEM software suite (GEM, GPS, KMAC, KSM, RMD, etc.)☆10Aug 14, 2018Updated 7 years ago
- Web version of ontology creation tool Populous☆16Mar 16, 2022Updated 4 years ago