kharchenkolab / vrnmf
Volume-regularized NMF
☆17Updated 2 years ago
Alternatives and similar repositories for vrnmf:
Users that are interested in vrnmf are comparing it to the libraries listed below
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- ☆19Updated 7 years ago
- ☆16Updated 6 years ago
- Interactive benchmarking of ranking and assignment methods☆14Updated last month
- ☆11Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 2 years ago
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated 3 months ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Updated 11 months ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 5 years ago
- Core utilities for single-cell RNA-seq☆12Updated last month
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆20Updated last year
- post-clustering differential expression test☆35Updated 5 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆19Updated 6 months ago
- Benchmarking project for scalable clustering algorithms with large observations and HDF5 files☆8Updated 4 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- ☆20Updated last year
- ☆10Updated 7 years ago
- inference of transcription factor activity at the single cell level☆12Updated 2 weeks ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated last year
- ☆26Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Updated 9 months ago
- R package for benchmarking single cell analysis methods☆30Updated last year
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago