kharchenkolab / vrnmfLinks
Volume-regularized NMF
☆17Updated 3 years ago
Alternatives and similar repositories for vrnmf
Users that are interested in vrnmf are comparing it to the libraries listed below
Sorting:
- Core utilities for single-cell RNA-seq☆12Updated 5 months ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 7 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- Out-of-Core Principal Component Analysis☆19Updated 7 years ago
- Gene orthologs for model organisms in a tidy data format☆14Updated 2 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- ☆16Updated 6 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 2 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 3 months ago
- R package for computation of (adjusted) rand-index and other such scores☆27Updated last year
- DYNamics Agnostic Network MOdels☆18Updated 7 years ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 4 months ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- ☆13Updated 5 months ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Updated last year
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆23Updated last year
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- ☆15Updated last year
- This is the R implementation of a robust correlation matrix estimator usefull in case of high-dimensional data to remove the bias. It al…☆13Updated 6 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- Statistical Inference for Unsupervised Learning☆16Updated 8 months ago
- This repository is retired software☆13Updated 9 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- Gene-level general linear mixed model☆22Updated 8 months ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆28Updated 2 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated last month
- Examples using R and 1000 genomes data☆28Updated 4 years ago