andreaskapou / scMETLinks
Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
☆23Updated last year
Alternatives and similar repositories for scMET
Users that are interested in scMET are comparing it to the libraries listed below
Sorting:
- Topics In Data Science and Bioinformatics☆79Updated last year
- Single Cell multimodal data scripts for downloading datasets☆17Updated 3 weeks ago
- Gene-level general linear mixed model☆23Updated 2 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 2 months ago
- Single sample network reconstruction in R☆23Updated 5 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Toolbox package for organizing and working with TCGA data☆28Updated 3 weeks ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 weeks ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 6 months ago
- Clone of the Bioconductor repository for the basilisk package.☆29Updated last month
- R package for plotting 3D graphical visualization of multi-omics data.☆23Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated last month
- ☆21Updated 2 years ago
- ☆95Updated last year
- A Bioconductor package to retrieve and analyze data from the Human Protein Atlas☆37Updated this week
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 11 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 weeks ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- ☆25Updated 6 months ago