Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
☆25Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for scMET
Users that are interested in scMET are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 6 years ago
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 6 years ago
- A Bioconductor R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging p…☆11Jul 13, 2025Updated last year
- ☆12Mar 12, 2024Updated 2 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆13Mar 22, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated 6 months ago
- General functions for analyzing combinatorial indexing sequence data☆10Oct 1, 2019Updated 7 years ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 9 years ago
- CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis☆10May 16, 2019Updated 7 years ago
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆34Jan 29, 2026Updated 9 months ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- Python package with CLI for the analysis of single cell methylation data.☆22Oct 29, 2024Updated 2 years ago
- ☆13Oct 2, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Toolkit for single-cell DNA methylation analysis.☆52May 25, 2026Updated 5 months ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆57Mar 12, 2026Updated 7 months ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 3 years ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Readme☆10Mar 15, 2020Updated 6 years ago
- scNMT-seq gastrulation☆44Feb 8, 2023Updated 3 years ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆18Jan 26, 2026Updated 9 months ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Allele-Specific Expression by Single-Cell RNA Sequencing☆31Oct 15, 2020Updated 6 years ago
- Estimate PTM hotspots in protein sequence alignments☆16Feb 6, 2019Updated 7 years ago
- Runs and compares different methylation based cell type deconvolution algorithms☆12Jul 30, 2025Updated last year
- ☆12Sep 7, 2023Updated 3 years ago
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Mar 16, 2020Updated 6 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆17Dec 21, 2023Updated 2 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.☆13Dec 15, 2025Updated 10 months ago
- Flame: Functional enrichment analysis using multiple gene lists☆13May 21, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Probabilistic PCA which is applicable also on data with missing values. Missing value estimation is typically better than NIPALS but also…☆16Jun 13, 2019Updated 7 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆54Mar 21, 2026Updated 7 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- countsimQC - Compare characteristic features of count data sets☆31Apr 28, 2026Updated 6 months ago
- Flexible omics pipeline☆17Oct 16, 2025Updated last year
- Modeling variable guide efficiency in pooled CRISPR screens with ContrastiveVI+☆11May 5, 2025Updated last year
- Long RNA-seq analysis workflow☆23Oct 13, 2025Updated last year