andreaskapou / scMETLinks
Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
☆23Updated last year
Alternatives and similar repositories for scMET
Users that are interested in scMET are comparing it to the libraries listed below
Sorting:
- Topics In Data Science and Bioinformatics☆79Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Toolbox package for organizing and working with TCGA data☆28Updated last month
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- Single sample network reconstruction in R☆23Updated 5 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated 2 years ago
- Clone of the Bioconductor repository for the basilisk package.☆28Updated 3 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- Gene-level general linear mixed model☆22Updated 7 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- R package for benchmarking single cell analysis methods☆32Updated last year
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 3 years ago
- An R package to plot interactive three-way differential expression analysis☆38Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- countsimQC - Compare characteristic features of count data sets☆28Updated last month
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- ☆62Updated 5 months ago
- ☆95Updated last year
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 3 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆66Updated last week
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated 2 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆39Updated last year
- Template for building a bioconductor workshop package using github actions☆21Updated 2 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 8 months ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year