Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
☆24Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for scMET
Users that are interested in scMET are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Clustering and Imputation of Single Cell Methylomes☆15Jul 16, 2020Updated 5 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Mar 22, 2024Updated 2 years ago
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 5 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Sep 17, 2025Updated 6 months ago
- ☆13Oct 2, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- Readme☆10Mar 15, 2020Updated 6 years ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆10Oct 22, 2017Updated 8 years ago
- scNMT-seq gastrulation☆42Feb 8, 2023Updated 3 years ago
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Mar 16, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 5 months ago
- ☆15Aug 22, 2016Updated 9 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- Distributed Deep Learning Tutorial☆21Mar 10, 2026Updated last month
- Probabilistic PCA which is applicable also on data with missing values. Missing value estimation is typically better than NIPALS but also…☆15Jun 13, 2019Updated 6 years ago
- Information Constraints on Auto-Encoding Variational Bayes☆11May 24, 2018Updated 7 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆56Mar 12, 2026Updated 3 weeks ago
- Code for performing PCA followed by CCA☆18Dec 2, 2018Updated 7 years ago
- Highlighted grep of R objects☆11Feb 28, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆15May 24, 2022Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆27Feb 4, 2023Updated 3 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆51Mar 21, 2026Updated 3 weeks ago
- ☆12Aug 21, 2025Updated 7 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 2, 2026Updated last week
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 2 years ago
- A Python package for jointly analyzing multimodal single-cell sequencing data☆26Jan 17, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- Nextflow + Docker tutorial material☆25Oct 24, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- R package to read ImageJ ROI files☆12Aug 17, 2024Updated last year
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 4 months ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Mar 31, 2023Updated 3 years ago
- ☆20Oct 10, 2020Updated 5 years ago
- ☆10Aug 27, 2023Updated 2 years ago
- A converter from Evernote export (html) to turtl backup JSON☆11Jul 5, 2022Updated 3 years ago