Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
☆25Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for scMET
Users that are interested in scMET are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 5 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Mar 22, 2024Updated 2 years ago
- A Bioconductor R package for detecting cell-to-cell variably methylated regions (VMRs) from single-cell bisulfite sequencing leveraging p…☆10Jul 13, 2025Updated 10 months ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated last month
- ☆13Oct 2, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b …☆11Dec 8, 2022Updated 3 years ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- countsimQC - Compare characteristic features of count data sets☆30Apr 28, 2026Updated 3 weeks ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆31Jul 11, 2025Updated 10 months ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 8 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scNMT-seq gastrulation☆42Feb 8, 2023Updated 3 years ago
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Mar 16, 2020Updated 6 years ago
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 8 years ago
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 7 months ago
- Distributed Deep Learning Tutorial☆21Mar 10, 2026Updated 2 months ago
- R bindings for Google's s2 library for geometry on the sphere☆30Aug 16, 2019Updated 6 years ago
- Probabilistic PCA which is applicable also on data with missing values. Missing value estimation is typically better than NIPALS but also…☆15Jun 13, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotland☆10Updated this week
- Information Constraints on Auto-Encoding Variational Bayes☆11May 24, 2018Updated 7 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆56Mar 12, 2026Updated 2 months ago
- Code for performing PCA followed by CCA☆18Dec 2, 2018Updated 7 years ago
- Highlighted grep of R objects☆11Feb 28, 2023Updated 3 years ago
- ☆15May 24, 2022Updated 3 years ago
- ☆12Aug 21, 2025Updated 9 months ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 3 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNA-seq Quantification of Alternative Polyadenylation☆53Mar 21, 2026Updated 2 months ago
- A Python package for jointly analyzing multimodal single-cell sequencing data☆26Jan 17, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- Nextflow + Docker tutorial material☆25Oct 24, 2017Updated 8 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- My presentation at RStudio::conf(2019), Austin, Tx - "The lazy and easily distracted report writer"☆17Feb 5, 2019Updated 7 years ago
- A tool for detecting identifiable information in data sources (CSV, DICOM, Relational Database and MongoDB)☆14Nov 24, 2025Updated 5 months ago