andreaskapou / scMETLinks
Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
☆23Updated last year
Alternatives and similar repositories for scMET
Users that are interested in scMET are comparing it to the libraries listed below
Sorting:
- Topics In Data Science and Bioinformatics☆78Updated last year
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated last month
- Clone of the Bioconductor repository for the basilisk package.☆28Updated last month
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 2 weeks ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated last year
- Visualising single-cell trajectories, including comparisons between two models 📈☆31Updated 3 years ago
- Gene-level general linear mixed model☆22Updated 5 months ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated this week
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 2 weeks ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 3 months ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Full annotation using shape-constrained trees☆25Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- A Bioconductor package to retrieve and analyze data from the Human Protein Atlas☆36Updated last month
- Clone of the Bioconductor repository for the scRNAseq package.☆28Updated 5 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 7 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆45Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆95Updated last year
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆30Updated 2 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆64Updated 3 weeks ago
- Single sample network reconstruction in R☆22Updated 5 years ago
- ☆62Updated 3 months ago