kblin / covid-spike-classificationView external linksLinks
Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.
☆11Apr 15, 2022Updated 3 years ago
Alternatives and similar repositories for covid-spike-classification
Users that are interested in covid-spike-classification are comparing it to the libraries listed below
Sorting:
- Phylodynamic estimation of nCoV incidence and prevalence☆19Feb 14, 2020Updated 6 years ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated 10 months ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Nov 19, 2025Updated 2 months ago
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Updated this week
- All things manipulating, quantifying, and visualizing geochemical data☆12Jan 19, 2024Updated 2 years ago
- This module includes functions that can be used to simulate mechanochemical phenomena.☆11Nov 16, 2021Updated 4 years ago
- ☆16Jun 21, 2023Updated 2 years ago
- Graph neural network for predicting energy of known and hypothetical crystal structures☆10Jan 26, 2022Updated 4 years ago
- Calculating paramagnetic NMR effects in proteins☆10May 20, 2022Updated 3 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jan 26, 2025Updated last year
- A simple OpenGL 3.2 example using MSVS 2010 and freeglut☆12Feb 4, 2013Updated 13 years ago
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- Deploy a containerized Node.js app on ECS Fargate with an ALB using AWS CDK. Showcases ECS code-mounting for hot-reloading and remote deb…☆14Aug 11, 2025Updated 6 months ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆13Feb 3, 2026Updated last week
- Supervised Ridge classification. Machine learning algorithms applied to classification machine learning problems☆12Jul 18, 2023Updated 2 years ago
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆10Jun 16, 2022Updated 3 years ago
- ☆10Feb 28, 2018Updated 7 years ago
- Canonical (Kohn-Sham) molecular orbital calculation software for large molecules such as protein☆13Mar 26, 2025Updated 10 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Sep 27, 2025Updated 4 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- The official code for "Advancing Multimodal Large Language Models with Quantization-Aware Scale Learning for Efficient Adaptation" | [MM2…☆14Dec 7, 2024Updated last year
- Beyond Pixels: Semi-Supervised Semantic Segmentation with a Multi-scale Patch-based Multi-Label Classifier (Accepted ECCV 2024)☆10May 6, 2025Updated 9 months ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- Libva backend for the sunxi-cedrus v4l2 m2m driver. Upstream moved to https://github.com/free-electrons/cedrus☆10Aug 29, 2016Updated 9 years ago
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- [ECCV24] MOD-UV: Learning Mobile Object Detectors from Unlabeled Videos☆11Oct 7, 2024Updated last year
- A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbio…☆10Jan 23, 2026Updated 3 weeks ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- Unofficially Implements https://arxiv.org/abs/2112.05682 to get Linear Memory Cost on Attention for PyTorch☆12Jan 16, 2022Updated 4 years ago
- A lambda calculus parser, evaluator and repl☆11Oct 30, 2021Updated 4 years ago
- [ICLR 2026] Optimization-free Dataset Distillation for Object Detection. Paper at: https://arxiv.org/abs/2506.01942☆22Jan 26, 2026Updated 2 weeks ago
- DEPRECATED! This project has moved to mbed-os☆11Jan 10, 2017Updated 9 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago