PROBIC / mGEMSLinks
mGEMS Genomic epidemiology with mixed samples
☆15Updated last year
Alternatives and similar repositories for mGEMS
Users that are interested in mGEMS are comparing it to the libraries listed below
Sorting:
- Plasmid analysis using rearrangement distances☆45Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆54Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆62Updated 3 months ago
- Recombination-free trees☆60Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- Genome size estimation from long read overlaps☆61Updated last week
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- viralFlye pipeline☆18Updated last year
- Calculate assocations between genes and traits☆26Updated 6 months ago
- Order and orientation of complete bacterial genomes☆28Updated 2 months ago
- Colinear block visualisation tool☆31Updated last year
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Archived - please see updated sccmec tool at link below☆13Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆16Updated 6 months ago
- Predict MLST directly from uncorrected long reads