Bahler-Lab / pypheLinks
Python toolbox for phenotype analysis of arrayed microbial colonies
☆17Updated last year
Alternatives and similar repositories for pyphe
Users that are interested in pyphe are comparing it to the libraries listed below
Sorting:
- PaperBLAST: find papers about a protein or its homologs☆42Updated 2 weeks ago
- Protein Alignment and Detection Interface☆61Updated last year
- gutSMASH☆55Updated 7 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- ☆27Updated 5 years ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆25Updated 5 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- ☆31Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- A package to annotate protein sequences☆60Updated 5 months ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆15Updated 10 months ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month
- ☆35Updated 2 years ago
- ☆19Updated 2 years ago
- Automatically exported from code.google.com/p/prank-msa☆28Updated 4 months ago
- Codon Usage Analysis and Prediction of Gene Expressivity☆22Updated 6 years ago
- A set of tools to analyse the output from TraDIS analyses☆24Updated 2 years ago
- SINA - Reference based multiple sequence alignment☆42Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- cgat-apps repository☆34Updated 4 months ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- ☆50Updated 3 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆41Updated last week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆87Updated last week
- From metagenomes to epitopes and beyond☆13Updated 2 months ago
- Parse GFF3 into Pandas dataframes☆30Updated last year