Python toolbox for phenotype analysis of arrayed microbial colonies
☆17Feb 9, 2024Updated 2 years ago
Alternatives and similar repositories for pyphe
Users that are interested in pyphe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scanomatic☆11Oct 12, 2023Updated 2 years ago
- Tool for estimating growth rates from microbial growth curves☆31Feb 4, 2026Updated last month
- Print barcodes in R☆10Oct 27, 2020Updated 5 years ago
- General low-level API☆50Jul 18, 2022Updated 3 years ago
- Robust and user-friendly analysis of growth curves☆29Feb 26, 2026Updated 3 weeks ago
- JBEI Quantitative Metabolic Modeling library☆13Feb 7, 2020Updated 6 years ago
- Screen interactions with AlphaFold Multimer☆14Mar 10, 2025Updated last year
- (Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.☆12Jun 28, 2018Updated 7 years ago
- ☆10Jul 23, 2020Updated 5 years ago
- QGIS svg icons - Animal silhouettes☆12Nov 17, 2018Updated 7 years ago
- Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar☆12Aug 16, 2017Updated 8 years ago
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆21Feb 10, 2026Updated last month
- An rmarkdown template for preparing a PhD thesis at the University of British Columbia☆13Mar 21, 2022Updated 4 years ago
- ☆19Jan 6, 2023Updated 3 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated last month
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 3 months ago
- Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/clien…☆12May 28, 2022Updated 3 years ago
- ☆13Dec 4, 2025Updated 3 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19May 26, 2024Updated last year
- Individual-based Dynamics of Microbial Communities Simulator☆18Aug 4, 2022Updated 3 years ago
- A Quarto extension for French governmental documents☆17Nov 22, 2022Updated 3 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Aug 12, 2025Updated 7 months ago
- Convert bibliography files between various formats, including BibTeX, BibLaTeX, PubMed, RIS, and Bibentry. This is an R port of the bibut…☆17Mar 5, 2026Updated 2 weeks ago
- Convert BibTeX entries to formatted Markdown for use with the kramdown processor☆26May 14, 2016Updated 9 years ago
- ☆14Apr 30, 2020Updated 5 years ago
- Orchestrating Hi-C analysis with Bioconductor☆11Jul 11, 2025Updated 8 months ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆42Jun 10, 2016Updated 9 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- tree visualization for tree + annotation data☆58Jun 17, 2025Updated 9 months ago
- MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)☆15Mar 6, 2026Updated 2 weeks ago
- ☆14Feb 25, 2026Updated 3 weeks ago
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- RT2 Lab website, built with Jekyll.☆15Apr 12, 2023Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated 2 months ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- File format for 96-well plate layouts.☆25Nov 1, 2023Updated 2 years ago