Bahler-Lab / pypheLinks
Python toolbox for phenotype analysis of arrayed microbial colonies
☆17Updated last year
Alternatives and similar repositories for pyphe
Users that are interested in pyphe are comparing it to the libraries listed below
Sorting:
- A package to annotate protein sequences☆60Updated 8 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- PaperBLAST: find papers about a protein or its homologs☆46Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- ☆27Updated 5 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆61Updated 5 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆59Updated 6 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Updated last year
- gutSMASH☆55Updated 3 weeks ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- ☆19Updated 2 years ago
- A tool for agile functional analysis of shotgun metagenomic data☆25Updated last year
- ☆67Updated 9 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A healthy human gut genome collection☆24Updated 2 months ago
- ☆25Updated 4 years ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆25Updated 8 months ago
- A comprehensive pipeline for short read metagenomic data☆25Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- map Illumina metagenomes to genomes!☆38Updated last month
- ☆35Updated 2 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 2 weeks ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆30Updated 5 months ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Updated 4 years ago