Alternatives and similar repositories for pyphe

Users that are interested in pyphe are comparing it to the libraries listed below

• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆45Updated last week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago
• metageni / SUPER-FOCUS
  A tool for agile functional analysis of shotgun metagenomic data
  ☆25Updated 11 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 2 years ago
• EBI-Metagenomics / MGnifyR
  R package for searching, downloading and analysis of EBI MGnify metagenomics data
  ☆22Updated 4 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 8 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆63Updated 11 months ago
• biocore / q2-greengenes2
  A QIIME 2 plugin for interaction with the Greengenes2 database
  ☆31Updated 11 months ago
• mpdunne / alan
  Alignment viewer for linux terminal
  ☆123Updated 5 months ago
• katholt / plotTree
  ☆67Updated 9 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 6 months ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆65Updated last month
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated last month
• kelwyres / Bactabolize
  ☆39Updated 2 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆34Updated last year
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆116Updated last year
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆78Updated last month
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆36Updated 3 years ago
• addityea / ASAP
  Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.
  ☆25Updated 6 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• AstrobioMike / bit
  Bioinformatics Tools
  ☆89Updated last week
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆78Updated 9 months ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆95Updated last year
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆34Updated 5 months ago
• BradyAJohnston / plasmapR
  Creating plasmid maps inside ggplot.
  ☆89Updated 9 months ago
• metageni / Scaffold_builder
  Combining de novo and reference-guided assembly with Scaffold_builder
  ☆19Updated 3 years ago
• GCA-VH-lab / FlaGs
  ☆19Updated 2 years ago