Alternatives and similar repositories for GLMHMM

Users that are interested in GLMHMM are comparing it to the libraries listed below

• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆50Updated 2 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 6 years ago
• nicholas-roy / psytrack
  ☆55Updated 7 months ago
• irisstone / glmhmm
  code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs)
  ☆31Updated last year
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆15Updated 5 years ago
• tjd2002 / tjd-shared-code
  Neuroscience/electrophsyiology data analysis tools (mostly Matlab)
  ☆14Updated 6 years ago
• egokcen / DLAG
  A dimensionality reduction framework for disentangling the flow of signals between populations of neurons
  ☆33Updated last month
• pillowlab / GLMspiketraintutorial_python
  ☆59Updated 3 years ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆66Updated 9 months ago
• zashwood / ssm
  Bayesian learning and inference for state space models
  ☆14Updated 3 years ago
• Eden-Kramer-Lab / replay_trajectory_classification
  State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
  ☆49Updated last week
• rajanlab / CURBD
  Code to train and analyze multi-region data-constrained RNNs and perform Current-Based Decomposition (CURBD)
  ☆54Updated 4 years ago
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆54Updated 7 months ago
• lposani / decodanda
  Decoding and geometrical analysis of neural activity with built-in best practices
  ☆45Updated 5 months ago
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 4 years ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆68Updated 2 weeks ago
• gloewing / photometry_FLMM
  Code for Functional Mixed Models for Fiber Photometry
  ☆13Updated 2 months ago
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆37Updated last year
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆106Updated this week
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆72Updated 5 years ago
• PeyracheLab / Class-Decoding
  Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.
  ☆12Updated 5 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆142Updated 2 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆77Updated 5 months ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆64Updated this week
• petersaj / AP_histology
  Histology processing
  ☆70Updated 3 weeks ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆236Updated 6 months ago
• PeyracheLab / Tutorial_HDPlaceCells_Analysis
  A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.
  ☆15Updated 7 years ago
• ahwillia / tensortools
  A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA
  ☆39Updated last year
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆132Updated 3 months ago