Alternatives and similar repositories for GLMHMM

Users that are interested in GLMHMM are comparing it to the libraries listed below

• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆50Updated 2 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 5 years ago
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆15Updated 5 years ago
• egokcen / DLAG
  A dimensionality reduction framework for disentangling the flow of signals between populations of neurons
  ☆32Updated this week
• Eden-Kramer-Lab / replay_trajectory_classification
  State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
  ☆49Updated 11 months ago
• nicholas-roy / psytrack
  ☆54Updated 5 months ago
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 4 years ago
• pillowlab / GLMspiketraintutorial_python
  ☆57Updated 2 years ago
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆71Updated 5 years ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆66Updated 8 months ago
• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆102Updated this week
• tjd2002 / tjd-shared-code
  Neuroscience/electrophsyiology data analysis tools (mostly Matlab)
  ☆14Updated 6 years ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆66Updated last month
• irisstone / glmhmm
  code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs)
  ☆31Updated last year
• rajanlab / CURBD
  Code to train and analyze multi-region data-constrained RNNs and perform Current-Based Decomposition (CURBD)
  ☆54Updated 4 years ago
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆54Updated 5 months ago
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated last year
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆128Updated last month
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆37Updated last year
• buzsakilab / 3d_print_designs
  ☆18Updated last year
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆43Updated 6 years ago
• mdhumphries / SpikeTrainCommunitiesToolBox
  MATLAB toolbox for spike-train community detection
  ☆15Updated last year
• gloewing / photometry_FLMM
  Code for Functional Mixed Models for Fiber Photometry
  ☆13Updated 3 weeks ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆76Updated 4 months ago
• GiocomoLab / ln-model-of-mec-neurons
  Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…
  ☆23Updated 3 years ago
• AllenInstitute / brain_observatory_examples
  Gallery of visualizations and analyses of the Allen Brain Observatory
  ☆25Updated 3 years ago
• lposani / decodanda
  Decoding and geometrical analysis of neural activity with built-in best practices
  ☆44Updated 4 months ago
• zashwood / ssm
  Bayesian learning and inference for state space models
  ☆13Updated 3 years ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆63Updated this week
• themattinthehatt / behavenet
  Toolbox for analyzing behavioral videos and neural activity
  ☆59Updated last year