Alternatives and similar repositories for photometry_preprocessing

Users that are interested in photometry_preprocessing are comparing it to the libraries listed below

• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆76Updated 3 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆28Updated this week
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆52Updated 6 months ago
• petersaj / AP_histology
  Histology processing
  ☆68Updated 3 weeks ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 10 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 11 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆127Updated last month
• Whitlock-Group / HERBS
  ☆52Updated 11 months ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated this week
• AllenNeuralDynamics / aind-ephys-spikesort-kilosort25-full
  CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
  ☆12Updated last year
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆36Updated last week
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆40Updated 4 years ago
• leomol / FPA
  Fiber photometry analysis
  ☆22Updated 4 months ago
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆16Updated 3 weeks ago
• gloewing / photometry_FLMM
  Code for Functional Mixed Models for Fiber Photometry
  ☆12Updated last week
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆174Updated 2 weeks ago
• mdhumphries / SpikeTrainCommunitiesToolBox
  MATLAB toolbox for spike-train community detection
  ☆15Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆27Updated this week
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆27Updated 3 years ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆65Updated last month
• jenniferColonell / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆61Updated last month
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆150Updated last week
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆138Updated 3 weeks ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆93Updated 8 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• katemartian / Photometry_data_processing
  ☆26Updated 2 years ago
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆48Updated 2 months ago
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆109Updated this week