ThomasAkam / photometry_preprocessingLinks
Fiber photometry data preprocessing - denoising, photobleaching and motion correction.
☆27Updated 2 years ago
Alternatives and similar repositories for photometry_preprocessing
Users that are interested in photometry_preprocessing are comparing it to the libraries listed below
Sorting:
- Registration of cells across sessions.☆75Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- pyqt5 dependent applications for IBL sessions☆32Updated 2 months ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated 2 weeks ago
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆13Updated last year
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆64Updated last month
- Utilities for managing Neuropixel datasets and Kilosort results☆48Updated 7 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- Histology processing☆71Updated last week
- Code for Functional Mixed Models for Fiber Photometry☆13Updated 5 months ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆73Updated last week
- ☆52Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated 3 weeks ago
- pynapple collaborative data analysis (high level python scripts)☆38Updated 3 weeks ago
- cortex lab code for electrophysiology☆85Updated last year
- A curated list of awesome Neuropixels resources.☆121Updated 2 weeks ago
- MATLAB toolbox for spike-train community detection☆15Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago
- Fiber photometry analysis☆22Updated 3 weeks ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last month
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ☆28Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- ☆18Updated last week