kaspermunch / PopulationGenomicsCourseLinks
Course in population genomics at BiRC
☆12Updated 4 months ago
Alternatives and similar repositories for PopulationGenomicsCourse
Users that are interested in PopulationGenomicsCourse are comparing it to the libraries listed below
Sorting:
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆16Updated 3 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Population Genomics in R workshop☆12Updated last year
- Scripts to convert between file formats for various analyses☆16Updated 4 months ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Updated 2 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆22Updated 2 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 5 months ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 4 months ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- R package to draw syntenic plots in 3 different styles☆42Updated 3 weeks ago
- Transposable Elements MOvement detection using LOng reads☆24Updated last month
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 9 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Killifish genomics scripts☆12Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- Upscaling SV detection to a multi-population level.☆22Updated last month
- ☆10Updated 5 years ago
- R-package: Calculation of haplotype blocks and libraries☆33Updated last month
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago