Alternatives and similar repositories for PopulationGenomicsCourse:

Users that are interested in PopulationGenomicsCourse are comparing it to the libraries listed below

• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 3 months ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated 2 weeks ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆15Updated last month
• SamueleSoraggi / HMMploidy
  A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
  ☆17Updated 2 years ago
• enormandeau / snplift
  Transfer coordinates across genomes
  ☆23Updated 10 months ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated last month
• evodify / genotype-files-manipulations
  Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
  ☆10Updated 4 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• Popgen48 / scalepopgen
  ☆23Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆24Updated last week
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated last year
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆19Updated last year
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated 9 months ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆24Updated last month
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated 2 years ago
• genomicsITER / one-liners
  Frequently used commands in Bioinformatics
  ☆20Updated 2 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆33Updated 2 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆40Updated 2 weeks ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆31Updated 5 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆64Updated last month
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆25Updated 5 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆17Updated 5 years ago
• ben-laufer / Tag-seq
  3’ Tag RNA-seq pipeline (Work in progress)
  ☆10Updated 4 years ago
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆15Updated 7 years ago