kaspermunch / PopulationGenomicsCourseLinks
Course in population genomics at BiRC
☆12Updated 6 months ago
Alternatives and similar repositories for PopulationGenomicsCourse
Users that are interested in PopulationGenomicsCourse are comparing it to the libraries listed below
Sorting:
- Population Genomics in R workshop☆12Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 8 months ago
- Scripts to convert between file formats for various analyses☆16Updated 6 months ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Updated 2 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆23Updated 2 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Killifish genomics scripts☆12Updated 4 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Updated 3 years ago
- All kinds of NGS analysis pipeline☆12Updated 6 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 7 months ago
- toolkit to process gtf files☆17Updated 3 years ago
- R-package: Calculation of haplotype blocks and libraries☆34Updated 3 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 11 months ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 6 months ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 3 weeks ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆23Updated 3 weeks ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated 3 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 6 years ago
- ☆31Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆41Updated last year
- Repository for pipeline code☆26Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 3 months ago
- Distribution of TEs and their relationship to genes in host genome☆23Updated 2 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19Updated 6 months ago