Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.
☆20May 3, 2019Updated 6 years ago
Alternatives and similar repositories for BIOLITMAP
Users that are interested in BIOLITMAP are comparing it to the libraries listed below
Sorting:
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- Guangchuang Yu's CV☆43Feb 2, 2026Updated last month
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Nov 24, 2018Updated 7 years ago
- Easy to define segments in y-axis for 'ggplot2'.☆27Oct 6, 2019Updated 6 years ago
- Set Proxy in R Console☆12Mar 11, 2025Updated 11 months ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆14Mar 4, 2025Updated last year
- ☆14Oct 14, 2020Updated 5 years ago
- documentation for trackViewer☆29Aug 6, 2019Updated 6 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Apr 11, 2025Updated 10 months ago
- ☆17Jul 3, 2018Updated 7 years ago
- Analysis of the population diversity of SARS-CoV-2 within and between individual patients☆15Apr 30, 2020Updated 5 years ago
- simple django app for blast search☆18Feb 3, 2026Updated last month
- A lightweight Python graphing API for genomic features☆15Jul 8, 2022Updated 3 years ago
- ☆15Apr 26, 2022Updated 3 years ago
- ☆17Nov 9, 2020Updated 5 years ago
- provide extra layers for ggplot2☆36May 31, 2025Updated 9 months ago
- ggplot2 grab bag.☆16Nov 30, 2025Updated 3 months ago
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Nov 4, 2021Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20May 20, 2025Updated 9 months ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆22Jan 19, 2018Updated 8 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 weeks ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆76Nov 5, 2025Updated 4 months ago
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆19Jul 7, 2023Updated 2 years ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆20Oct 28, 2024Updated last year
- Convolutional neural network for categorising prostate cancer from MRI images.☆11Jul 22, 2020Updated 5 years ago
- A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform☆56Jan 8, 2023Updated 3 years ago
- R/Package Version Check☆22Oct 22, 2021Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- gutSMASH☆58Oct 3, 2025Updated 5 months ago
- DEG analysis and KEGG/GO enrichment analysis☆69Dec 23, 2017Updated 8 years ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Dec 11, 2025Updated 2 months ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago