Alternatives and similar repositories for survClust

Users that are interested in survClust are comparing it to the libraries listed below

• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated this week
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 11 months ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 3 years ago
• Sage-Bionetworks / synapser
  An R package providing programmatic access to Synapse
  ☆37Updated 3 months ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆72Updated this week
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 2 months ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated last week
• facilebio / FacileAnalysis
  Modular & interactive analysis components for bioinformatics
  ☆18Updated 3 weeks ago
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆41Updated 4 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆27Updated last week
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆92Updated last year
• waldronlab / ProjectAsPackage
  Demonstration of the use of an R package to organize a data analysis project
  ☆22Updated 5 years ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆68Updated 3 weeks ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated last month
• cmap / morpheus.R
  R interface to morpheus.js heatmap widget
  ☆39Updated 5 years ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated last week
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆47Updated 2 years ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆63Updated 9 months ago
• leekgroup / recount-website
  Code for the Recount project
  ☆11Updated 11 months ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆39Updated 2 years ago
• tshmak / lassosum
  LASSO for GWAS with summary statistics
  ☆78Updated 5 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated 3 weeks ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆38Updated 3 weeks ago
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 4 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 3 years ago