kaistomics / DeepNeoLinks
identification of immunogenic neoepitopes
☆12Updated 2 years ago
Alternatives and similar repositories for DeepNeo
Users that are interested in DeepNeo are comparing it to the libraries listed below
Sorting:
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆70Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆22Updated 3 weeks ago
- HLA-I ligand predictor☆41Updated 6 months ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Updated last year
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆88Updated last year
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Updated 2 years ago
- ☆25Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated this week
- HLA-II ligand predictor.☆44Updated 2 years ago
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆16Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆39Updated 10 months ago
- Evolutionary conservation estimation of residues or nucleotides☆45Updated 3 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- PRedictor of IMmunogenic Epitopes☆23Updated 2 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- Peptide library design☆23Updated 4 years ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆9Updated 2 years ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆34Updated last year
- A visualization software for antibody multi sequence alignment☆18Updated last year
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆16Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆27Updated 2 months ago
- Pipeline for protein-protein interaction prediction☆23Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆41Updated 11 months ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21Updated 3 years ago
- Python package for investigating the structural context of PTMs☆28Updated 6 months ago