Alternatives and similar repositories for pepsyn:

Users that are interested in pepsyn are comparing it to the libraries listed below

• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆16Updated last year
• KULL-Centre / _2022_functional-sites-cagiada
  ☆21Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆49Updated 5 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆33Updated 2 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆24Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated 11 months ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 3 years ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆30Updated 10 months ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• tommyhuangthu / SSIPe
  an accurate approach for predicting protein-protein affinity changes upon interfacial amino-acid mutations by combining physics and evolu…
  ☆11Updated last year
• drgoulet / Codon-optimization
  Use machine learning to design codon-optimized DNA sequences for increased protein expression.
  ☆15Updated 2 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆20Updated 5 months ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated 10 months ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆28Updated last year
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• dphansti / CORAL
  ☆28Updated 2 years ago
• hzi-bifo / epitope-prediction
  ☆16Updated 7 months ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆11Updated this week
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆20Updated 6 years ago
• fhalab / channels
  Gaussian process models for optimizing channelrhodopsin properties.
  ☆11Updated 4 years ago
• KarchinLab / HotMAPS_2016
  Detects hotspot regions for somatic mutations in 3D protein structures
  ☆2Updated 10 months ago
• jrash / chemmodlab
  chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models
  ☆15Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆23Updated last year
• ewbell94 / PEPPI
  Pipeline for protein-protein interaction prediction
  ☆18Updated 2 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• issararab / EPSAPG
  EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
  ☆11Updated 9 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆30Updated 7 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆27Updated last year
• wind22zhu / BioMedR
  generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.
  ☆16Updated 5 years ago