Alternatives and similar repositories for pepsyn:

Users that are interested in pepsyn are comparing it to the libraries listed below

• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆37Updated 3 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆15Updated 2 weeks ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆16Updated 2 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆24Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• JudeWells / chainsaw
  ☆34Updated 6 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆53Updated 4 months ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• proteinphysiologylab / frustratometeR
  ☆34Updated 5 months ago
• mcollatz / EpiDope
  Prediction of B-cell epitopes from amino acid sequences using deep neural networks.
  ☆14Updated 3 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• mgalardini / pdb2uniprot
  Convert PDB residues to their Uniprot equivalents
  ☆17Updated 5 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 7 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆35Updated 6 months ago
• DeepRank / PSSMGen
  Generates consistent PSSM and/or PDB files for protein-protein complexes
  ☆19Updated 2 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆22Updated last month
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆15Updated last year
• rnajena / EpiDope
  Prediction of B-cell epitopes from amino acid sequences using deep neural networks.
  ☆16Updated 2 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆32Updated 9 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆24Updated 3 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated 2 weeks ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆57Updated 2 weeks ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆20Updated 6 years ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆82Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆49Updated 3 months ago