Wang-Lin-boop / GetPDB
Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicates(Optional, maybe lost some conformation changed structures) and save as "UniprotID-PDBID-ModelID-ChainID.pdb/cif".
☆35Updated last month
Related projects: ⓘ
- ☆44Updated 3 months ago
- ☆44Updated 6 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆55Updated last month
- ☆18Updated 3 months ago
- ☆63Updated last week
- ☆30Updated 2 years ago
- ☆74Updated 2 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆24Updated 8 months ago
- ☆63Updated 2 months ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆39Updated this week
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆34Updated 3 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆22Updated 3 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆51Updated 2 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆103Updated last month
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆44Updated 5 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆71Updated 5 months ago
- ☆21Updated 2 years ago
- RNA Multiple Sequence Alignment☆24Updated last year
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆18Updated 3 years ago
- Convenience Python APIs for antibody numbering using ANARCI☆80Updated this week
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆35Updated last week
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆27Updated last year
- ☆24Updated last month
- ☆28Updated 9 months ago
- Parametric Building of de novo Functional Topologies☆43Updated 2 years ago
- ☆75Updated 2 years ago
- An accurate and efficient protein sequence design approach☆19Updated 9 months ago
- ☆12Updated 7 months ago
- Transformer Based Language Model for Peptide Property Prediction☆33Updated last month