Wang-Lin-boop / GetPDBLinks
Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicates(Optional, maybe lost some conformation changed structures) and save as "UniprotID-PDBID-ModelID-ChainID.pdb/cif".
☆42Updated last year
Alternatives and similar repositories for GetPDB
Users that are interested in GetPDB are comparing it to the libraries listed below
Sorting:
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆51Updated this week
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 3 weeks ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 4 months ago
- ☆31Updated 3 years ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆106Updated last year
- ☆41Updated 4 months ago
- ☆30Updated last year
- ColabFold protocol☆52Updated 9 months ago
- ☆73Updated 10 months ago
- Pipeline for protein-protein interaction prediction☆23Updated 3 years ago
- Set of useful HADDOCK utility scripts☆53Updated 11 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆101Updated 3 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆48Updated this week
- A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery☆37Updated 3 weeks ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- ☆68Updated 10 months ago
- Machine learning models for antibody sequences in PyTorch☆40Updated 4 years ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆22Updated 4 years ago
- AlphaFold-initiated replica exchange protein docking☆83Updated 2 months ago
- ☆20Updated 4 months ago
- ☆35Updated 2 years ago
- ☆47Updated 3 weeks ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆59Updated last year
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆19Updated 5 months ago
- PLM based active learning model for protein engineering☆82Updated last year