Wang-Lin-boop / GetPDB
Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicates(Optional, maybe lost some conformation changed structures) and save as "UniprotID-PDBID-ModelID-ChainID.pdb/cif".
☆37Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for GetPDB
- ☆45Updated 5 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆78Updated 7 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆58Updated 3 months ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆19Updated 3 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆41Updated 5 months ago
- ☆25Updated 2 years ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- ☆65Updated 2 months ago
- ☆21Updated 5 months ago
- ☆31Updated 2 years ago
- ☆33Updated last month
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆28Updated last year
- Geometric deep learning of protein–DNA binding specificity☆49Updated last month
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆51Updated 2 years ago
- ☆31Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 2 weeks ago
- ☆82Updated 4 months ago
- ☆19Updated 5 months ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆12Updated 6 months ago
- ☆29Updated 11 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆26Updated 3 weeks ago
- scripts and facilities for in-silico mutagenesis with FoldX☆51Updated this week
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago
- RNA Multiple Sequence Alignment☆24Updated last year
- ☆46Updated 9 months ago
- Code repository of "Deep generative design of RNA family sequences"☆28Updated 4 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆43Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆48Updated 3 months ago
- PyDock Tutorial☆30Updated 6 years ago