xinyu-dev / annotate_vLinks
Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
☆30Updated 2 years ago
Alternatives and similar repositories for annotate_v
Users that are interested in annotate_v are comparing it to the libraries listed below
Sorting:
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- ☆45Updated 6 months ago
- ☆23Updated 4 years ago
- ☆53Updated last month
- ☆72Updated 5 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆42Updated last year
- ☆46Updated 8 months ago
- Set of useful HADDOCK utility scripts☆55Updated 2 weeks ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Machine learning-driven antibody design☆60Updated 2 years ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆75Updated 2 months ago
- Neural networks for deep mutational scanning data☆69Updated 4 months ago
- DeepAAI☆35Updated 9 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 6 months ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Updated 3 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- Solvent Accessible Surface calculation software for biomolecules.☆18Updated 2 years ago
- pyFoldX: python bindings for FoldX.☆49Updated 4 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 6 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- ☆25Updated last year
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆41Updated 4 months ago
- Protein language model trained on coding DNA☆50Updated 11 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆46Updated 2 months ago
- RosettaDesign using PyRosetta☆32Updated 6 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago