xinyu-dev / annotate_v
Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
☆30Updated last year
Alternatives and similar repositories for annotate_v:
Users that are interested in annotate_v are comparing it to the libraries listed below
- ☆40Updated last month
- Machine learning models for antibody sequences in PyTorch☆39Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- ☆68Updated 4 years ago
- ☆19Updated 3 weeks ago
- ☆49Updated last month
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- ☆38Updated 3 months ago
- ☆20Updated 2 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated last year
- ☆45Updated last year
- Public repository describing training and testing of AntiBERTa.☆58Updated 2 years ago
- ☆21Updated 3 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆36Updated 2 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆25Updated 2 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆41Updated 9 months ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆21Updated 4 years ago
- Predict the structure of immune receptor proteins☆48Updated 5 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- An antibody-specific language model focusing on NGL prediction☆27Updated 8 months ago
- Machine learning prediction of enzyme optimum pH☆33Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated last month
- ☆35Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆30Updated 2 weeks ago
- ☆67Updated 7 months ago
- Tools for annotation, processing and ML for antibody sequences☆27Updated this week
- pyFoldX: python bindings for FoldX.☆44Updated 3 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆23Updated 11 months ago