Alternatives and similar repositories for annotate_v

Users that are interested in annotate_v are comparing it to the libraries listed below

• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆41Updated 4 years ago
• piercelab / tcrmodel2
  ☆45Updated 8 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆107Updated 4 months ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• dahjan / DMS_opt
  ☆73Updated 5 years ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆56Updated 2 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 3 months ago
• enai4bio / DeepAAI
  DeepAAI
  ☆35Updated 11 months ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆53Updated 4 years ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆34Updated last week
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• ywlim / Antibody_deep_learning
  Code for the antibody deep learning paper.
  ☆16Updated 3 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆61Updated 8 months ago
• AbSciBio / igdesign
  ☆47Updated 10 months ago
• ChakradharG / PeptideBERT
  Transformer Based Language Model for Peptide Property Prediction
  ☆49Updated last year
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago
• oxpig / dlab-public
  Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
  ☆31Updated 3 years ago
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆46Updated last year
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆34Updated 5 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• MartinThoma / propy3
  A Python 3 version of the protein descriptor package propy
  ☆46Updated 2 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆74Updated last month
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆62Updated 2 years ago
• dina-lab3D / NanoNet
  ☆50Updated 2 years ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆33Updated last year
• Liuxg16 / GeoPPI
  ☆89Updated 3 years ago
• nioroso-x3 / dr_sasa_n
  Solvent Accessible Surface calculation software for biomolecules.
  ☆18Updated 2 years ago