kad-ecoli / python_scripts
scripts for parsing PDB, fasta, and GO
☆14Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for python_scripts
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆18Updated 8 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- ☆66Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆16Updated 2 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆15Updated 6 months ago
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- Code for LazyAF pipeline☆21Updated 9 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆37Updated 5 years ago
- Multi-Species Codon Optimization Engine☆26Updated 11 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- Python Implementation of Codon Adaption Index☆34Updated last year
- Stand Alone version of ConSurf with detailed tutorial - (installation + database + usage)☆13Updated last year
- Feature map and function annotation of Proteins☆30Updated 5 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆29Updated 3 weeks ago
- Deep learning model to predict degron sequences☆18Updated last year
- ORFFinder in Python☆15Updated 2 months ago
- Diverse Genomic Embedding Benchmark☆37Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆60Updated 2 years ago
- ColabFold protocol☆44Updated last month
- HLA-I ligand predictor☆29Updated 6 months ago
- a pipeline to build similarity maps of protein space☆30Updated 4 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆14Updated 7 years ago
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆17Updated last month
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆40Updated last year
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆12Updated 5 years ago
- Python framework for doing ancestral sequence reconstruction☆34Updated 4 months ago
- Python package and command line tool for epitope prediction☆49Updated 3 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆28Updated this week
- Fully convolutional deep learning variant effect predictor architecture☆23Updated 10 months ago