Alternatives and similar repositories for python_scripts

Users that are interested in python_scripts are comparing it to the libraries listed below

• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆67Updated 3 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• ntranoslab / esm-variants
  ☆86Updated 2 years ago
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆44Updated 2 years ago
• Profluent-AI / CRISPR-Cas-Atlas
  An atlas of CRISPR-Cas systems from systematic genome mining
  ☆25Updated 6 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 4 months ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆20Updated 3 years ago
• hexavier / CUSTOM
  Codon optimizer for tissue-specific expression
  ☆17Updated last year
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆23Updated last year
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• Rostlab / goPredSim
  ☆50Updated last year
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆43Updated 7 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆72Updated 2 months ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 3 years ago
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆33Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆50Updated 5 months ago
• Illumina / PromoterAI
  ☆87Updated 2 months ago
• lingxusb / megaDNA
  ☆74Updated last year
• WangLabTHU / deepseed
  ☆32Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆57Updated 6 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆16Updated 8 years ago
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆13Updated 2 years ago
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆38Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆55Updated 4 months ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 3 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated 3 weeks ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆34Updated 6 months ago