Alternatives and similar repositories for syntist

Users that are interested in syntist are comparing it to the libraries listed below

• divelab / deepem3d
  ☆17Updated 7 years ago
• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 4 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆50Updated 2 weeks ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆85Updated last week
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆16Updated 2 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 11 months ago
• BrancoLab / imgreg2D
  2D image registration in python, using napari.
  ☆16Updated 3 years ago
• samik1986 / ML_Semantic_Segmenation_NMI
  ☆19Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 8 months ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• BigNeuron / Data
  ☆16Updated 8 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆34Updated 2 years ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 2 months ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 4 months ago
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆16Updated 3 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 2 years ago
• mhlabCodingTeam / SegEM
  Semi automated image analysis toolkit for Connectomics
  ☆12Updated 5 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆70Updated 2 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated this week
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆61Updated 2 weeks ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆57Updated last week
• funkelab / lsd
  🌈
  ☆59Updated 4 months ago
• TuragaLab / malis
  MALIS structured loss function for supervised learning of segmentation and clustering
  ☆18Updated 2 years ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆156Updated 2 weeks ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 5 months ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• Kainmueller-Lab / PatchPerPix
  official implementation of the PatchPerPix instance segmentation method
  ☆34Updated 2 years ago
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆19Updated last year