kreshuklab / spoco
PyTorch implementation of SPOCO
☆32Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for spoco
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆112Updated 9 months ago
- official implementation of the PatchPerPix instance segmentation method☆27Updated last year
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆76Updated this week
- Pytorch implementation of the LearnedRandomWalker module☆30Updated 4 years ago
- Learning to Model Pixel-Embedded Affinity for Homogeneous Instance Segmentation☆12Updated last year
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆18Updated last year
- Python package for deep learning based image to image transformation☆49Updated 5 months ago
- Unsupervised Instance Segmentation in Microscopy☆21Updated 7 months ago
- ☆13Updated 2 years ago
- ☆17Updated this week
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise re…☆35Updated last year
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆21Updated last year
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Updated 4 years ago
- Masked Autoencoder Guided Segmentation at Pixel Resolution☆15Updated last year
- ☆17Updated last year
- ☆10Updated 4 years ago
- Generalized algorithm for agglomerative clustering of signed graphs☆11Updated 2 years ago
- Pretraining a foundation model for generalizable fluorescence microscopy-based image restoration☆41Updated 6 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆48Updated last month
- This code was submitted to Cell Tracking Challenge, ISBI 2020.☆14Updated 3 years ago
- 🌈☆52Updated last year
- ☆30Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆27Updated 4 months ago
- This is our implementation of Probabilistic Noise2Void☆71Updated last year
- iSegFormer: Interactive Image/Volume Segmentation using Vision Transformers (MICCAI 2022)☆27Updated 4 months ago
- 3 different deep learning approaches to segment nuclei and identify associated markers☆8Updated 2 years ago
- Accepted by ISBI 2022 (Oral)☆37Updated 2 years ago
- A deep learning model for single cell segmentation from microsopy images.☆31Updated this week
- ☆25Updated 4 years ago