Analysis pipelines for cancer genome sequencing in mice.
☆23Jul 29, 2024Updated last year
Alternatives and similar repositories for MoCaSeq
Users that are interested in MoCaSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- ☆12Apr 26, 2020Updated 5 years ago
- A computational workflow for exitron splicing identification☆15Aug 30, 2024Updated last year
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Jan 18, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 3 months ago
- ☆20Sep 28, 2019Updated 6 years ago
- Learning resources originally for a class held December 2020 "Dry bench skills for Researchers". Expanding based upon mini-courses.☆11Jan 27, 2022Updated 4 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated last month
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆20Dec 17, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Nov 10, 2021Updated 4 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 9 months ago
- Awesome resources for biological engineering students compiled by the MIT Communication Lab☆23Apr 8, 2019Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆41Jan 30, 2023Updated 3 years ago
- ☆20Jul 14, 2021Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆58Jan 28, 2023Updated 3 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Mar 9, 2026Updated 3 weeks ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- A continually expanding collection of RNA-seq tools☆54Feb 8, 2026Updated last month
- A web app that uses machine learning to recommend the most suitable journals based on the text content of your preprint☆22May 23, 2023Updated 2 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Mar 11, 2026Updated 2 weeks ago
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated last year
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 4 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Aug 22, 2021Updated 4 years ago
- ☆17Aug 10, 2020Updated 5 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Mar 2, 2026Updated 3 weeks ago
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 7 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year