Analysis pipelines for cancer genome sequencing in mice.
☆23Jun 19, 2026Updated 2 months ago
Alternatives and similar repositories for MoCaSeq
Users that are interested in MoCaSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- A computational workflow for exitron splicing identification☆16Jul 17, 2026Updated last month
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 8 months ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Jan 18, 2021Updated 5 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated 2 months ago
- Filter and prioritize fusion calls☆20May 26, 2026Updated 3 months ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆17Dec 10, 2019Updated 6 years ago
- ☆18Nov 5, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆20Dec 17, 2024Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Nov 10, 2021Updated 4 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 22, 2026Updated 2 months ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated 2 years ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆12Nov 9, 2020Updated 5 years ago
- ☆20Jul 14, 2021Updated 5 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- A web app that uses machine learning to recommend the most suitable journals based on the text content of your preprint☆22May 23, 2023Updated 3 years ago
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆58Jan 28, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A continually expanding collection of RNA-seq tools☆55Aug 11, 2026Updated 3 weeks ago
- Flexible Bayesian inference of mutational signatures☆43Jan 30, 2023Updated 3 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 5 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis☆12Mar 23, 2024Updated 2 years ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆21Oct 17, 2025Updated 10 months ago
- Fast array utilities☆15Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Microsatellite instability (MSI) detection for tumor only data.☆117Apr 23, 2024Updated 2 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Updated this week
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 8 years ago
- ☆13Sep 24, 2025Updated 11 months ago
- a lightweight bam file depth statistical tool☆163Jul 2, 2026Updated 2 months ago
- Frequently used commands in Bioinformatics☆22Apr 28, 2026Updated 4 months ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year