roland-rad-lab / MoCaSeqLinks
Analysis pipelines for cancer genome sequencing in mice.
☆21Updated last year
Alternatives and similar repositories for MoCaSeq
Users that are interested in MoCaSeq are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆33Updated 10 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- ☆25Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- ☆17Updated last year
- ☆23Updated 4 years ago
- ☆20Updated 6 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆15Updated 7 years ago
- ☆17Updated 6 years ago
- ☆23Updated 7 months ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 10 months ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- DriverPower☆26Updated 9 months ago
- CLIP Tool Kit (CTK)☆22Updated last year
- MutSig2CV from Lawrence et al. 2014☆32Updated 5 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year