jnktsj / DNApiLinks
De novo adapter prediction algorithm for small RNA sequencing data
☆23Updated 8 years ago
Alternatives and similar repositories for DNApi
Users that are interested in DNApi are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆57Updated 8 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- PHAST☆74Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- ☆78Updated 11 years ago
- ☆51Updated 6 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- TIDDIT - structural variant calling☆76Updated 4 months ago
- parallelized blat with multi-threads support☆53Updated 7 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 10 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Algorithm to detect germline and de novo transposon insertions☆29Updated 3 weeks ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆24Updated 6 years ago