Danko-Lab / dREGLinks
Detecting Regulatory Elements using GRO-seq and PRO-seq
☆37Updated last month
Alternatives and similar repositories for dREG
Users that are interested in dREG are comparing it to the libraries listed below
Sorting:
- IDR☆31Updated 2 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆27Updated 5 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated this week
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 weeks ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last week
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- ☆34Updated 5 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 2 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆24Updated 5 months ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Updated 7 years ago
- A preprocessing and QC pipeline for HiChIP data☆38Updated 2 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated this week
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- An R package to time somatic mutations☆61Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 9 months ago