Danko-Lab / dREGLinks
Detecting Regulatory Elements using GRO-seq and PRO-seq
☆40Updated 7 months ago
Alternatives and similar repositories for dREG
Users that are interested in dREG are comparing it to the libraries listed below
Sorting:
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆29Updated last year
- Ultraperformant reimplementation of SICER☆58Updated 3 weeks ago
- ☆72Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- Tools for working with BUS files☆102Updated 6 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- IDR☆31Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆49Updated 2 weeks ago
- ☆38Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Lightweight and Fast; RNA-seq quantification at the event-level☆116Updated 7 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago