Detecting Regulatory Elements using GRO-seq and PRO-seq
☆42Apr 30, 2025Updated last year
Alternatives and similar repositories for dREG
Users that are interested in dREG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆31Dec 13, 2024Updated last year
- A modular, containerized pipeline for PRO-seq data processing☆13Mar 6, 2026Updated 7 months ago
- ☆16Sep 16, 2026Updated 3 weeks ago
- R interface to query UCSC bigWig files☆14Aug 23, 2020Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Dec 12, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Nascent Transcription Processing Pipeline☆25Sep 1, 2026Updated last month
- Tutorials covering various topics in genomic data analysis.☆17Nov 29, 2018Updated 7 years ago
- ☆15Feb 6, 2023Updated 3 years ago
- Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.☆12Sep 12, 2025Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 6 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆84Jan 24, 2025Updated last year
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- The R package for SVM with GPU architecture based on the GTSVM software☆32Aug 4, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Analysis pipeline for CUT&TAG data☆25Sep 2, 2020Updated 6 years ago
- A suite of regression-based tools for ribosome profiling data analysis☆10Sep 23, 2026Updated 2 weeks ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 8 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Published methods☆15Oct 19, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Dec 16, 2022Updated 3 years ago
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Statistically Significant loops from HiChIP data☆49Apr 17, 2024Updated 2 years ago
- About Workflow related meetup☆14Dec 4, 2024Updated last year
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated 2 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 5 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated last year
- Ultra-fast 5' and 3' demultiplexer☆31Apr 23, 2024Updated 2 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆31Jun 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆55Jun 17, 2025Updated last year
- Genome databases generation pipeline for ngs.plot and region_analysis.☆17Sep 8, 2015Updated 11 years ago
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- Accurate and flexible loops calling tool for 3D genomic data.☆114May 19, 2022Updated 4 years ago
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Sep 21, 2026Updated 2 weeks ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 8 years ago