Bioconductor / RsamtoolsLinks
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
☆28Updated last month
Alternatives and similar repositories for Rsamtools
Users that are interested in Rsamtools are comparing it to the libraries listed below
Sorting:
- Representation and manipulation of genomic intervals☆46Updated 2 months ago
- Genomic plot in trellis layout☆41Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Query the gene models of a given organism/assembly☆27Updated last month
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 8 months ago
- R interface to the JBrowse 2 Linear Genome View.☆38Updated last year
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 7 months ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 9 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 9 months ago
- interactive plots for differential expression analysis☆34Updated 2 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- R interface to genome annotation files and the UCSC genome browser☆35Updated last month
- ☆29Updated last year
- Glimma R package☆50Updated 11 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- DriverPower☆26Updated 7 months ago
- An R for fast and flexible DNA methylation analysis☆33Updated last month
- A tidyverse and grammar of graphics powered line traces visualizer☆30Updated 3 weeks ago
- R package wrapping bedtools☆42Updated 5 months ago
- This is the ensembldb development repository.☆35Updated last week
- Lollipop-diagram to interactively visualize genetic mutations☆32Updated 11 months ago
- Integrative analysis of structural variations.☆40Updated last year
- ☆21Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year