DomBennett / treeman
An R package for manipulating phylogentic trees
☆11Updated 4 years ago
Alternatives and similar repositories for treeman:
Users that are interested in treeman are comparing it to the libraries listed below
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 7 months ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆14Updated 6 years ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆18Updated last year
- phylogenetic networks using ggplot2 and ggtree☆13Updated last month
- R/Shiny application for viewing microbial community data☆19Updated 4 years ago
- polysat 1.7: tools for polyploid microsatellite analysis☆11Updated last month
- Create and Query a Local Copy of GenBank in R☆26Updated 10 months ago
- An Amazing Shiny App☆17Updated 3 years ago
- population genetic simulations with R and Shiny☆27Updated 3 months ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆17Updated last year
- A book for teaching people how to do comparative methods in R☆20Updated last year
- Ordination lectures for Ecological Methods in Oulu☆18Updated 6 months ago
- ☆11Updated 2 years ago
- phylogenetic networks using ggplot2 and ggtree☆11Updated 2 years ago
- This site provides information on conducting reproducible science using the R language.☆14Updated 8 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- babette is an R package to work with BEAST2☆44Updated this week
- Interface to Open Tree of Life API☆40Updated last year
- ☆17Updated last year
- Dendrograms for Evolutionary Analysis☆11Updated 5 years ago
- Phylocom R interface☆15Updated last year
- Access sequences from the 1000 Plant Initiative (1KP)☆13Updated last year
- An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data☆9Updated 2 years ago
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆15Updated last month
- R package to run BEAST2☆11Updated 3 weeks ago
- A template for creating modular shiny applications that meet academic standards and are reproducible☆18Updated this week
- Exploring the Phylogenetic Signal in Continuous Traits☆16Updated last year
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆17Updated 11 months ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago