gwforg / gwfLinks
A flexible, pragmatic workflow tool.
☆32Updated 5 months ago
Alternatives and similar repositories for gwf
Users that are interested in gwf are comparing it to the libraries listed below
Sorting:
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Parse Illumina sample sheets with Python☆50Updated last year
- chitin: an awful shell for awful bioinformaticians☆61Updated 5 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- This pipeline has moved! Please see:☆11Updated 7 years ago
- Query language for filtering SAM/BAM reads☆31Updated last year
- conda recipes for genomic data☆84Updated 4 years ago
- Windowed Adaptive Trimming for fastq files using quality☆25Updated 10 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆76Updated 8 years ago
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- A 3'-end adapter contaminant trimmer☆95Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 11 months ago
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- ☆73Updated 6 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 9 months ago
- Explore and analyze biological sequence data☆17Updated last year
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆31Updated 9 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago