gwforg / gwfLinks
A flexible, pragmatic workflow tool.
☆32Updated 3 weeks ago
Alternatives and similar repositories for gwf
Users that are interested in gwf are comparing it to the libraries listed below
Sorting:
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- ☆43Updated 9 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Reference genome resource manager☆76Updated last year
- Parse Illumina sample sheets with Python☆50Updated last year
- a pileup library that embraces the huge☆43Updated 4 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 6 months ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 9 months ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 2 weeks ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- chitin: an awful shell for awful bioinformaticians☆61Updated 5 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆38Updated last year
- This pipeline has moved! Please see:☆11Updated 7 years ago
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- vembrane filters VCF records using python expressions☆60Updated this week
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Query language for filtering SAM/BAM reads☆31Updated 8 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 6 years ago
- Fast fusion detection using kallisto☆80Updated 2 weeks ago
- Explore and analyze biological sequence data☆16Updated 10 months ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago