gwforg / gwf
A flexible, pragmatic workflow tool.
☆31Updated this week
Alternatives and similar repositories for gwf:
Users that are interested in gwf are comparing it to the libraries listed below
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆42Updated last year
- chitin: an awful shell for awful bioinformaticians☆61Updated 4 years ago
- ☆37Updated this week
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- A Github action for running a Snakemake workflow☆56Updated 3 weeks ago
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Parse Illumina sample sheets with Python☆50Updated 10 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Fast fusion detection using kallisto☆80Updated 3 months ago
- A cookiecutter template for Snakemake workflows☆57Updated 3 years ago
- Deprecated : Use https://github.com/drpowell/degust☆44Updated 7 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆34Updated last year
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- Nextflow plugin for VIM☆49Updated last year
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Monitor computational workflows in real time☆70Updated 8 months ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- WDL plugin for pytest☆48Updated last year