gwforg / gwfLinks
A flexible, pragmatic workflow tool.
☆32Updated 2 months ago
Alternatives and similar repositories for gwf
Users that are interested in gwf are comparing it to the libraries listed below
Sorting:
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- chitin: an awful shell for awful bioinformaticians☆61Updated 5 years ago
- Parse Illumina sample sheets with Python☆51Updated last year
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- An ultra light YAML-based pipeline execution engine☆20Updated 7 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆76Updated 8 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Explore and analyze biological sequence data☆16Updated last year
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- NGS Language Bindings☆119Updated last year
- conda recipes for genomic data☆85Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated last month
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- Monitor computational workflows in real time☆74Updated last year
- Infrastructure code to support DNA pipeline☆38Updated 10 years ago
- ☆74Updated 6 years ago
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- This pipeline has moved! Please see:☆11Updated 7 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago