gwforg / gwf
A flexible, pragmatic workflow tool.
☆32Updated last month
Alternatives and similar repositories for gwf:
Users that are interested in gwf are comparing it to the libraries listed below
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Parse Illumina sample sheets with Python☆50Updated last year
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- Efficiently read and write sequencing data from Python☆62Updated last week
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- chitin: an awful shell for awful bioinformaticians☆61Updated 5 years ago
- ☆38Updated 2 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆40Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Flexible omics pipeline☆18Updated 9 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 5 months ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 7 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 5 months ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Nextflow plugin for VIM☆50Updated last year