A flexible, pragmatic workflow tool.
☆35Jun 2, 2026Updated 3 weeks ago
Alternatives and similar repositories for gwf
Users that are interested in gwf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- TIDDIT - structural variant calling☆10Dec 8, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Bandicoot is a programming system with a set-based programming language and a run-time environment.☆52Sep 24, 2015Updated 10 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 3 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- A typed logic programming language embedded in Haskell☆50Mar 3, 2013Updated 13 years ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Nov 9, 2016Updated 9 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 11 months ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆26Mar 15, 2023Updated 3 years ago
- Tools for data-driven spectra models with Gaussian processes. Pronounced "soap."☆33Dec 6, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Nov 16, 2016Updated 9 years ago
- The integrated pipeline for Indel detection☆17Apr 29, 2018Updated 8 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆67Jun 11, 2026Updated 2 weeks ago
- Reference-free duplex sequencing pipeline.☆19Oct 20, 2022Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 7 years ago
- ☆11Jun 17, 2023Updated 3 years ago
- Gene family evolution analysis of OneKP capstone paper☆13May 10, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- Fast and generic implementation of the minhash algorithm☆14Jul 8, 2025Updated 11 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆32Jun 27, 2017Updated 9 years ago
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated 2 years ago
- Simultaneous Classification and Motif Identification(eCAMI)☆11Nov 21, 2021Updated 4 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- Extended Near InfraRed spectra Information Content analysis.☆10Dec 14, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline for generating RNAseq-based cancer patient reports☆13Jun 11, 2026Updated 2 weeks ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147May 1, 2020Updated 6 years ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- DPPDIV☆12Apr 10, 2020Updated 6 years ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆17May 6, 2026Updated last month
- A few utilities for use on a SLURM cluster☆44May 6, 2026Updated last month