gwforg / gwfLinks
A flexible, pragmatic workflow tool.
☆32Updated 3 months ago
Alternatives and similar repositories for gwf
Users that are interested in gwf are comparing it to the libraries listed below
Sorting:
- chitin: an awful shell for awful bioinformaticians☆61Updated 5 years ago
- Parse Illumina sample sheets with Python☆50Updated last year
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 6 months ago
- Explore and analyze biological sequence data☆16Updated last year
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- This pipeline has moved! Please see:☆11Updated 7 years ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆88Updated 7 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Windowed Adaptive Trimming for fastq files using quality☆25Updated 10 years ago
- ☆73Updated 6 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆76Updated 8 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last year
- A 3'-end adapter contaminant trimmer☆95Updated 7 years ago
- A C library for handling bigWig files☆81Updated 8 months ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- Infrastructure code to support DNA pipeline☆38Updated 10 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago