johnlees / 23andme-imputeView external linksLinks
Scripts and advice to run IMPUTE2 on 23 and me raw data
☆22Mar 18, 2014Updated 11 years ago
Alternatives and similar repositories for 23andme-impute
Users that are interested in 23andme-impute are comparing it to the libraries listed below
Sorting:
- ☆13Nov 26, 2025Updated 2 months ago
- Source code for SimBac, a bacterial genome simulator☆14Sep 20, 2024Updated last year
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Mar 20, 2018Updated 7 years ago
- C++ wrapper to tabix indexer☆17Jun 27, 2025Updated 7 months ago
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Mar 22, 2017Updated 8 years ago
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Nov 24, 2025Updated 2 months ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆66May 5, 2023Updated 2 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Jul 13, 2018Updated 7 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Sep 20, 2025Updated 4 months ago
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- Add biological annotations to variants in a given VCF file.☆32Sep 13, 2021Updated 4 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Create database files for the genealogytree LaTeX package from GEDCOM files☆11Mar 11, 2025Updated 11 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆94Dec 9, 2025Updated 2 months ago
- The DNAnexus incremental upload script packaged as an Ansible Role☆13Apr 7, 2025Updated 10 months ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Convert 23andMe data to VCFs☆10Aug 8, 2016Updated 9 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Jan 21, 2026Updated 3 weeks ago
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 4 years ago
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edw…☆42Jan 22, 2026Updated 3 weeks ago
- ☆74Jan 28, 2026Updated 2 weeks ago
- PointGrey program for Raspberry Pi using hardware encoding☆10May 13, 2013Updated 12 years ago
- TextMate support for D☆13Feb 22, 2024Updated last year
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- A Prot paper related materials☆11Sep 5, 2022Updated 3 years ago
- Set up a persistent tunnel (using autossh) in Debian-like systems (server side)☆10Jul 24, 2025Updated 6 months ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 3 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 3 weeks ago
- ☆11Sep 18, 2017Updated 8 years ago
- a short graduate population biology course☆12Feb 22, 2023Updated 2 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆12Sep 4, 2024Updated last year
- ☆10Sep 16, 2020Updated 5 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago