Tools for generating and decoding error-correcting DNA barcodes
☆15Feb 15, 2022Updated 4 years ago
Alternatives and similar repositories for hamstring
Users that are interested in hamstring are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FREE Divergence Error-Correcting DNA Barcodes☆29Feb 6, 2025Updated last year
- Generate robust DNA barcode sets☆33Feb 6, 2024Updated 2 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 6 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Multi-origin batch effect remover method☆20Jan 31, 2023Updated 3 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Automate Site Creation and Automation and Device assignment using Cisco DNA Center APIs☆13Jun 5, 2019Updated 7 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 4 years ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆15Feb 19, 2025Updated last year
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆13May 14, 2026Updated last month
- Identify and correct invalid gene symbols☆63May 14, 2026Updated last month
- Build sourmash databases for genbank.☆10May 4, 2023Updated 3 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆14May 19, 2023Updated 3 years ago
- All pairs search and sequence clustering☆100Jun 14, 2022Updated 4 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49May 7, 2019Updated 7 years ago
- One stop MIP design and analysis☆25Sep 30, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- Fast pairwise sequence alignment using SeqAn, in Python.☆13Mar 23, 2019Updated 7 years ago
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- Repo for QGIS Sample data (aka Alaska dataset), used in QGIS Documentation☆18Sep 14, 2022Updated 3 years ago
- FinalVersions☆17Apr 3, 2017Updated 9 years ago
- Allele-specific copy number estimation with whole genome sequencing☆23Nov 10, 2023Updated 2 years ago
- Interact with CSV files as Python objects☆20Nov 5, 2013Updated 12 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Oct 31, 2022Updated 3 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Mar 7, 2013Updated 13 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- gabor filter bank, sift and bag of visual words implementation☆11Jul 20, 2019Updated 6 years ago
- ☆21Dec 26, 2025Updated 6 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Jun 17, 2026Updated last week