mdshw5 / hamstringLinks
Tools for generating and decoding error-correcting DNA barcodes
☆15Updated 3 years ago
Alternatives and similar repositories for hamstring
Users that are interested in hamstring are comparing it to the libraries listed below
Sorting:
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- ☆23Updated last month
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- ☆22Updated 2 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- ☆16Updated 11 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- sort genomic data☆36Updated 2 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Mutation rate analysis of autosomal loci☆15Updated 5 years ago
- Annotating principal splice isoforms☆16Updated last month
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 10 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago