splicebox / Jutils
Visualization toolkit for differential splicing events
☆16Updated last week
Related projects: ⓘ
- Comprehensive and scalable differential splicing analyses☆13Updated 3 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆20Updated last year
- simplified cellranger for long-read data☆15Updated 2 months ago
- ☆14Updated last month
- ☆17Updated 5 months ago
- ☆12Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Benchmarking long-read RNA-seq analysis tools☆24Updated 7 months ago
- ☆23Updated 3 years ago
- General Use Scripts and Helper functions☆17Updated 6 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆19Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆33Updated 2 months ago
- ☆15Updated 3 months ago
- ☆11Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- ☆16Updated 4 years ago
- Snakemake pipeline for microexon discovery and quantification☆19Updated 3 months ago
- A script to make downloading of SRA/GEO data easier☆29Updated 11 months ago
- Versatile FASTA/FASTQ demultiplexer.☆31Updated 3 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆23Updated 2 years ago
- ☆14Updated 2 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆12Updated 3 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆22Updated last year
- Single-cell Hi-C data analysis toolbox☆23Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 5 years ago
- RAGE-seq scripts☆17Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆21Updated last week
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago