lakinsm / meta-marcLinks
Metagenomic Markov Models for Antimicrobial Resistance Characterization - Source code
☆11Updated 6 years ago
Alternatives and similar repositories for meta-marc
Users that are interested in meta-marc are comparing it to the libraries listed below
Sorting:
- Count and compare 16S rRNA genes within a genus☆16Updated 11 months ago
- Systematic resistome analysis☆10Updated 5 years ago
- map Illumina metagenomes to genomes!☆39Updated last week
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆31Updated 2 months ago
- ☆29Updated last year
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- multiPhATE with comparative genomics☆19Updated 4 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- AMBER: Assessment of Metagenome BinnERs☆31Updated 6 months ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 2 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 5 years ago
- MiGA: Microbial Genomes Atlas☆31Updated last month
- a pipeline to cluster proteins into families☆10Updated 5 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Modular snakemake workflow for assembly-based metagenomics☆10Updated 7 years ago
- ☆13Updated last year
- shotgun pipeline☆12Updated 6 years ago
- A package to annotate protein sequences☆59Updated 4 months ago
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Updated 7 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- MAG Circularization Method☆33Updated 3 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Tools for analyzing trees☆14Updated 3 months ago