genome-vendor / bsmap
Unofficial repo for software vendoring or packaging purposes
☆19Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for bsmap
- tools to find circRNAs in RNA-seq data☆40Updated 7 years ago
- Tutorial Website☆53Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆43Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- ☆30Updated 6 years ago
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- ☆32Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆44Updated 7 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- identifying mutational significance in cancer genomes☆60Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated 11 months ago
- Allele-specific alignment sorting☆53Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- An R package to time somatic mutations☆60Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- Genomic Association Tester☆29Updated last year
- 4C-seq processing pipeline☆22Updated 7 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- STARRPeaker: STARR-seq peak caller☆15Updated 2 years ago