lulab / Pathformer
Pathformer: biological pathway informed transformer model
☆28Updated last year
Alternatives and similar repositories for Pathformer:
Users that are interested in Pathformer are comparing it to the libraries listed below
- Multi-omics integration method using AE and GCN☆34Updated last year
- A VGAE-based model to infer transcription factor regulatory network☆25Updated 2 years ago
- ☆42Updated last year
- ☆76Updated last year
- ☆36Updated 8 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆54Updated 8 months ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- ☆29Updated 2 years ago
- ☆44Updated 2 years ago
- ☆38Updated 2 years ago
- Create cell sentences from sequencing data☆22Updated 8 months ago
- ☆58Updated 7 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆72Updated last month
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆13Updated 6 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- ☆50Updated 4 months ago
- ☆30Updated 2 years ago
- ☆14Updated last year
- Code for evaluating single cell foundation models scBERT and scGPT☆41Updated 7 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆68Updated 3 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆54Updated 9 months ago
- ☆20Updated 6 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆41Updated last year
- Python package to load and query ARCHS4 data☆20Updated last month
- ☆53Updated 2 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆138Updated last year
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆16Updated last year
- repository containing analysis scripts and auxiliary files