Alternatives and similar repositories for Pathformer

Users that are interested in Pathformer are comparing it to the libraries listed below

• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 2 years ago
• zhanglab-wbgcas / STGRNS
  ☆29Updated 2 years ago
• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆34Updated 2 years ago
• lanagarmire / Asgard
  ☆42Updated last year
• datapplab / AutoClass
  ☆44Updated 2 years ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 10 months ago
• melobio / Concerto-reproducibility
  ☆38Updated 2 years ago
• TencentAILabHealthcare / scTranslator
  ☆36Updated last week
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆27Updated 2 years ago
• yjgeno / GenKI
  ☆15Updated last year
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆40Updated 2 years ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆73Updated 3 months ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆42Updated last year
• zpliulab / GENELink
  ☆31Updated 2 years ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆22Updated 9 months ago
• HantaoShu / DeepSEM
  ☆81Updated last year
• HelloWorldLTY / UKBioLM
  ☆17Updated last month
• DabinJeong / GOAT_multi-omics_biomarker
  Multi-omics biomarker discovery tool exploiting a gene-gene interaction network
  ☆17Updated last year
• SmritiChawla / Precily
  ☆30Updated 2 years ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆14Updated 7 months ago
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated last year
• theislab / scTab
  ☆58Updated 8 months ago
• xiongxslab / Translatomer
  ☆20Updated 3 months ago
• QuKunLab / MultiomeBenchmarking
  ☆44Updated 3 months ago
• jlakkis / sciPENN
  ☆17Updated 2 years ago
• labomics / midas
  ☆54Updated last month
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆34Updated 5 years ago
• Philyzh8 / scMGCA
  "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…
  ☆14Updated 2 years ago