Pathformer: biological pathway informed transformer model
☆37Dec 27, 2023Updated 2 years ago
Alternatives and similar repositories for Pathformer
Users that are interested in Pathformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway-based sparse deep neural network☆19Nov 9, 2020Updated 5 years ago
- Network construction Algorithm☆22Sep 5, 2024Updated last year
- Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases☆39Updated this week
- a machine learning model to identify nucleotide features determining RNA subcellular localization☆13Mar 11, 2023Updated 3 years ago
- Graph attention-based fusion of pathology images and gene expression for prediction of cancer survival☆13Dec 11, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dual-attention Enhanced Spatial Transcriptomics Denoiser☆12May 8, 2025Updated 11 months ago
- ☆25Aug 24, 2023Updated 2 years ago
- Code to go with my article "The AWK book's 60-line version of Make"☆15Sep 10, 2023Updated 2 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated last year
- ☆16Jun 27, 2025Updated 9 months ago
- MOMA: A Multi-task Attention Learning Algorithm for Multi-omics Data Interpretation and Classification☆19Apr 10, 2023Updated 3 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- Sparse Linear Regression Models☆19Apr 6, 2026Updated last week
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A pretrained single cell gene expression language model☆12Jun 6, 2023Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆15Mar 16, 2026Updated 3 weeks ago
- ☆26Jul 11, 2024Updated last year
- Explainable Multilayer Graph Neural Network for Cancer Gene Prediction☆21Nov 3, 2023Updated 2 years ago
- 基于pyqt和python-vlc开发的播放器demo，可以对阿里云视频直播进行监测☆10Mar 25, 2021Updated 5 years ago
- Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins☆13Nov 5, 2023Updated 2 years ago
- A novel spatial multi-modal omics framework, named PRototype-Aware Graph Adaptative aggregation (PRAGA) for spatial multi-modal omics ana…☆19May 29, 2025Updated 10 months ago
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is multi-omics data integrative analysis framework for classification tasks in biomedi…☆17Mar 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Python package with which to find network motifs in complex networks and to analyze a growing list of network-motif related stuff.☆23Jan 15, 2024Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆27Aug 19, 2025Updated 7 months ago
- Inferring disease-associated miRNAs☆10Mar 21, 2020Updated 6 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- ☆30Jul 18, 2025Updated 8 months ago
- ☆12Aug 2, 2020Updated 5 years ago
- SUPREME: A GCN based approach for cancer subtype prediction☆18Aug 9, 2023Updated 2 years ago
- BISulfite-seq CUI Toolkit☆26Feb 17, 2026Updated last month
- Inference of TCR motifs☆32Jun 17, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Source files for EDAV Fall 2021 Tues / Thurs Community Contribution Project☆24Oct 19, 2022Updated 3 years ago
- Perl class for direct graph data structures and algorithms☆23Mar 27, 2025Updated last year
- For BioHackathon Europe 2021.☆30Nov 18, 2022Updated 3 years ago
- ☆13Feb 12, 2024Updated 2 years ago
- This code reproduces the results presented in the paper "DAEMA: Denoising Autoencoder with Mask Attention" accepted at the ICANN 2021 con…☆14Aug 31, 2021Updated 4 years ago
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆21Jan 31, 2026Updated 2 months ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆66Jun 6, 2020Updated 5 years ago