Alternatives and similar repositories for Pathformer

Users that are interested in Pathformer are comparing it to the libraries listed below

• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆57Updated last year
• melobio / Concerto-reproducibility
  ☆40Updated 2 years ago
• SmritiChawla / Precily
  ☆31Updated 3 years ago
• datapplab / AutoClass
  ☆43Updated 3 years ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆41Updated 3 years ago
• TencentAILabHealthcare / scTranslator
  ☆62Updated 3 months ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• lanagarmire / Asgard
  ☆44Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆23Updated last year
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆28Updated 3 years ago
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 8 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• altoslabs / perturbench
  ☆62Updated last month
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• labomics / midas
  PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
  ☆61Updated 3 months ago
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆42Updated 2 weeks ago
• gao-lab / PASSAGE
  Phenotype Associated Spatial Signature Analysis with Graph-based Embedding
  ☆25Updated 8 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆64Updated last year
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆79Updated 2 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆38Updated 2 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆26Updated last year
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• zhoujt1994 / scHiCluster
  ☆69Updated last week
• HantaoShu / DeepSEM
  ☆86Updated 2 years ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 9 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 3 months ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆17Updated last year
• theislab / scTab
  ☆61Updated last year