lulab / PathformerLinks
Pathformer: biological pathway informed transformer model
☆35Updated last year
Alternatives and similar repositories for Pathformer
Users that are interested in Pathformer are comparing it to the libraries listed below
Sorting:
- ☆44Updated 3 years ago
- ☆40Updated 2 years ago
- ☆55Updated 3 weeks ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆57Updated last year
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆41Updated 3 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- A VGAE-based model to infer transcription factor regulatory network☆28Updated 3 years ago
- Multi-omics integration method using AE and GCN☆38Updated 2 years ago
- ☆85Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 8 months ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- ☆44Updated 2 months ago
- ☆25Updated 9 months ago
- ☆31Updated 3 years ago
- Python package to load and query ARCHS4 data☆24Updated 3 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated last year
- ☆18Updated last year
- ☆44Updated last year
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆30Updated 11 months ago
- ☆56Updated 3 months ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Updated 2 years ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Updated 2 years ago
- ☆24Updated 2 months ago
- ☆18Updated 3 years ago
- ☆30Updated 2 years ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆63Updated last month
- ☆61Updated last year
- ☆26Updated 5 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆107Updated last month