Pathformer: biological pathway informed transformer model
☆40Dec 27, 2023Updated 2 years ago
Alternatives and similar repositories for Pathformer
Users that are interested in Pathformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆18Apr 9, 2024Updated 2 years ago
- Pathway-based sparse deep neural network☆19Nov 9, 2020Updated 5 years ago
- Network construction Algorithm☆23Sep 5, 2024Updated 2 years ago
- Explainable Multilayer Graph Neural Network for Cancer Gene Prediction☆22Nov 3, 2023Updated 2 years ago
- a machine learning model to identify nucleotide features determining RNA subcellular localization☆13Mar 11, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 11 months ago
- Anatomy-aware Spatial Imputation Graphic Network for 3D Spatial Transcriptomics☆24Jun 28, 2025Updated last year
- Dual-attention Enhanced Spatial Transcriptomics Denoiser☆13May 8, 2025Updated last year
- ☆28Aug 24, 2023Updated 3 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module vi…☆23Apr 3, 2026Updated 5 months ago
- ☆26Jul 11, 2024Updated 2 years ago
- Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases☆44Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Sparse Linear Regression Models☆20Sep 14, 2026Updated last week
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction☆17Jul 8, 2021Updated 5 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 9 months ago
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆17Aug 19, 2026Updated last month
- ☆16Jun 27, 2025Updated last year
- Python Essentials for Biomedical Data Analysis: An Introductory Guide☆15Aug 14, 2025Updated last year
- ☆56Oct 31, 2025Updated 10 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code to go with my article "The AWK book's 60-line version of Make"☆17Sep 10, 2023Updated 3 years ago
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆19Feb 25, 2026Updated 6 months ago
- 基于pyqt和python-vlc开发的播放器demo,可以对阿里云视频直播进行监测☆10Mar 25, 2021Updated 5 years ago
- Source files for EDAV Fall 2021 Tues / Thurs Community Contribution Project☆24Oct 19, 2022Updated 3 years ago
- exRNA Biomarker Discovery for Liquid Biopsy☆11Oct 29, 2020Updated 5 years ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 3 months ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆76Dec 1, 2025Updated 9 months ago
- Appendix to the paper "Developing clinical prediction models: a step-by-step practical guide with examples in R"☆75Apr 16, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated 3 months ago
- Reproduce analyses and baselines from the State paper☆17Jun 29, 2026Updated 2 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Using TCR and expression for sequence embedding☆64Jan 6, 2026Updated 8 months ago
- ☆12Aug 2, 2020Updated 6 years ago
- BISulfite-seq CUI Toolkit☆28Aug 18, 2026Updated last month