lulab / PathformerLinks
Pathformer: biological pathway informed transformer model
☆34Updated 2 years ago
Alternatives and similar repositories for Pathformer
Users that are interested in Pathformer are comparing it to the libraries listed below
Sorting:
- ☆40Updated 3 years ago
- ☆43Updated 3 years ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 3 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆58Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- ☆76Updated 4 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆80Updated 4 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆61Updated last month
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- ☆18Updated 3 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- ☆33Updated 3 years ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆30Updated last year
- Create cell sentences from sequencing data☆23Updated last year
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Updated 2 years ago
- ☆59Updated 2 weeks ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 7 months ago
- ☆45Updated 2 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Updated 2 years ago
- ☆28Updated 11 months ago
- metadata and data from the database☆41Updated 5 years ago
- ☆88Updated 2 years ago
- A VGAE-based model to infer transcription factor regulatory network☆28Updated 3 years ago
- ☆30Updated 2 years ago
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆89Updated last year
- ☆22Updated 8 months ago