RTH-tools / crisproffLinks
off-targeting assessment of Cas9 gRNAs
☆15Updated 4 years ago
Alternatives and similar repositories for crisproff
Users that are interested in crisproff are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 4 months ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Updated 4 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆39Updated last month
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆34Updated last month
- iCodon customizes gene expression based on the codon composition☆15Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 3 weeks ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated 3 weeks ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆23Updated 3 weeks ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 3 months ago
- FlashFry: The rapid CRISPR target site characterization tool☆77Updated last year
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆48Updated 3 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- ☆81Updated 3 weeks ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆57Updated 9 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆98Updated this week
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 3 weeks ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated 2 weeks ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆89Updated last month
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- ☆49Updated 3 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- ☆39Updated 5 months ago
- BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data☆27Updated 3 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated last year