RTH-tools / crisproffLinks
off-targeting assessment of Cas9 gRNAs
☆15Updated 4 years ago
Alternatives and similar repositories for crisproff
Users that are interested in crisproff are comparing it to the libraries listed below
Sorting:
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Updated 6 months ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆24Updated 2 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Updated 3 months ago
- ☆11Updated 6 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 6 months ago
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 6 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- FlashFry: The rapid CRISPR target site characterization tool☆79Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆26Updated 2 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆34Updated 3 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆40Updated last year
- ☆39Updated 7 months ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 6 months ago
- ☆72Updated 2 months ago
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆49Updated 5 months ago
- ☆88Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 10 months ago
- A tool for visualising kmers in 2D space.☆12Updated 11 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago