RTH-tools / crisproffLinks
off-targeting assessment of Cas9 gRNAs
☆13Updated 4 years ago
Alternatives and similar repositories for crisproff
Users that are interested in crisproff are comparing it to the libraries listed below
Sorting:
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆20Updated 2 weeks ago
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆25Updated 3 weeks ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 6 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆24Updated 2 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated last month
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated 2 months ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆22Updated 2 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Fast and flexible ORF finder☆69Updated 3 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 10 months ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆11Updated 7 months ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- ☆15Updated 2 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 4 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- Public repository for ShapeMapper 2 releases☆35Updated 5 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆27Updated 6 years ago
- ☆39Updated 8 months ago
- A library for counting small kmer frequencies in nucleotide sequences.☆26Updated 7 months ago
- Merging paired-end reads and removing adapters☆44Updated 2 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆30Updated 3 years ago
- ☆11Updated 5 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 6 months ago
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆17Updated 2 years ago