Alternatives and similar repositories for TMbed

Users that are interested in TMbed are comparing it to the libraries listed below

• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• JudeWells / chainsaw
  ☆44Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆42Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 2 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆75Updated 2 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆56Updated 11 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆196Updated last month
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆84Updated 8 months ago
• TattaBio / gLM2
  ☆73Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated 3 weeks ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆97Updated 9 months ago
• Merck / bgc-pipeline
  ☆12Updated 11 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆75Updated 2 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆165Updated 11 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆97Updated 3 weeks ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆131Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• tymor22 / tm-vec
  ☆74Updated last year
• greener-group / progres
  Fast protein structure searching or your money back
  ☆115Updated last month
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• clairemcwhite / vcmsa
  ☆30Updated 2 years ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆55Updated 6 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 7 months ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆95Updated last week
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆51Updated 3 months ago
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆29Updated 5 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆48Updated 6 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated 2 years ago