BernhoferM / TMbed
Transmembrane proteins predicted through Language Model embeddings
☆35Updated 2 months ago
Alternatives and similar repositories for TMbed:
Users that are interested in TMbed are comparing it to the libraries listed below
- Python framework for doing ancestral sequence reconstruction☆39Updated 9 months ago
- Feature map and function annotation of Proteins☆32Updated 10 months ago
- ☆37Updated 6 months ago
- A domain parser for Alphafold models☆34Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆48Updated last month
- snakemake pipeline for creating trees from sequence sets☆76Updated last month
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 2 months ago
- Detection of remote homology by comparison of protein language model representations☆49Updated 3 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆102Updated 7 months ago
- ☆25Updated 10 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆53Updated last week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆124Updated 4 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆82Updated last year
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆42Updated 3 months ago
- ☆29Updated last year
- Fast protein domain structure embedding+search tool☆16Updated last week
- A tool for protein and protein complex structure prediction.☆27Updated 3 weeks ago
- ☆67Updated 6 months ago
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- Evolutionary velocity with protein language models☆90Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆164Updated last week
- Protein structure alignment and search algorithm☆59Updated 2 weeks ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 4 months ago
- Conservation analysis of homologous proteins with Python☆10Updated 3 years ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆34Updated last month
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆90Updated this week
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated 3 weeks ago
- DeepECtransformer☆24Updated last year