BernhoferM / TMbed
Transmembrane proteins predicted through Language Model embeddings
☆33Updated last month
Alternatives and similar repositories for TMbed:
Users that are interested in TMbed are comparing it to the libraries listed below
- ☆32Updated 5 months ago
- Python framework for doing ancestral sequence reconstruction☆37Updated 8 months ago
- A domain parser for Alphafold models☆34Updated last year
- Detection of remote homology by comparison of protein language model representations☆48Updated 2 months ago
- Feature map and function annotation of Proteins☆32Updated 8 months ago
- ☆29Updated last year
- ☆65Updated 5 months ago
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆52Updated 3 months ago
- ☆19Updated 3 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆42Updated last week
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆42Updated 2 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆121Updated 3 months ago
- ☆25Updated 9 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆21Updated 2 months ago
- ☆49Updated 9 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆86Updated 6 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 11 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆14Updated last month
- Machine learning prediction of enzyme optimum pH☆29Updated last month
- ☆58Updated 5 months ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆16Updated 2 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆33Updated this week
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆51Updated 11 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆19Updated 2 weeks ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 3 months ago
- ColabFold protocol☆49Updated 4 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆32Updated 2 years ago