andyposbe / ColabFold-Pipeline-ToolkitLinks
The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
☆16Updated last year
Alternatives and similar repositories for ColabFold-Pipeline-Toolkit
Users that are interested in ColabFold-Pipeline-Toolkit are comparing it to the libraries listed below
Sorting:
- Fast protein domain structure embedding+search tool☆25Updated 2 months ago
- Python framework for doing ancestral sequence reconstruction☆39Updated last year
- Virus Protein Structural Analysis Toolkit☆11Updated 10 months ago
- DeepECtransformer☆26Updated last year
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆46Updated 3 years ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated 3 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated last year
- ☆22Updated 2 years ago
- Feature map and function annotation of Proteins☆33Updated last year
- Conservation analysis of homologous proteins with Python☆12Updated 4 years ago
- Transmembrane proteins predicted through Language Model embeddings☆38Updated last week
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- A domain parser for Alphafold models☆39Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- Protein Sequence Annotation with Language Models☆23Updated 2 months ago
- ☆11Updated 7 months ago
- Protein structure alignment and search algorithm☆65Updated last week
- ☆17Updated this week
- Next generation sequence parameter library for proteins☆34Updated 3 weeks ago
- Code for LazyAF pipeline☆20Updated last year
- ☆11Updated last year
- ProtSpace is program that helps in visualizing and investigating our protein embedding space.☆28Updated this week
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- Ancestral Sequence Reconstruction in Python☆14Updated 6 years ago
- Scripts to generate and analyze afdb clusters☆11Updated last year
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆20Updated 9 months ago