The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
☆17Jan 29, 2024Updated 2 years ago
Alternatives and similar repositories for ColabFold-Pipeline-Toolkit
Users that are interested in ColabFold-Pipeline-Toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Public version for DistPepFold☆10Jul 17, 2025Updated 9 months ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Package to Draw NLR Domain Architecture using NLRtracker Output☆16Jul 30, 2021Updated 4 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Oct 24, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An intelligent command line interface for ChimeraX☆22Updated this week
- ☆25Apr 29, 2026Updated last week
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- A biological dual-language foundation model☆12Jun 16, 2025Updated 10 months ago
- Software for predicting translation initiation rates in bacteria☆33Jul 30, 2025Updated 9 months ago
- Designer scaffolded DNA DX-based wireframe lattices☆14Jul 28, 2018Updated 7 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- NLR annotation tool☆36Mar 6, 2024Updated 2 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆34May 23, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A PCR primer tool for DNA assembly flows☆33Apr 24, 2024Updated 2 years ago
- NEFF Calculator and MSA File Converter☆13Sep 16, 2025Updated 7 months ago
- ☆40Aug 31, 2021Updated 4 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- Generate usage documentation in Markdown format from Python scripts using argparse☆17Apr 13, 2026Updated 3 weeks ago
- ☆55Mar 12, 2026Updated last month
- ☆106Updated this week
- JOKES☆11Apr 16, 2023Updated 3 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Sep 18, 2025Updated 7 months ago
- calculating RMSD between 2 conformers with different atom names☆14Jan 13, 2021Updated 5 years ago
- Bi-Encoder approach for large-scale protein-peptide binding search☆13Jun 14, 2024Updated last year
- Repository of the data for PLUMED Masterclass 22.3☆14Jul 10, 2024Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- ☆12Apr 21, 2016Updated 10 years ago
- Python scripting library for generating designs readable by scadnano.☆16Apr 3, 2026Updated last month
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Creational, structural, and behavioral patterns in Python.☆13Aug 23, 2021Updated 4 years ago
- 16S pipeline using qiime2 created with snakemake☆12Apr 29, 2026Updated last week
- OMNI-P2x: A universal neural network potential for excited states☆13Mar 19, 2026Updated last month
- Protein prediction models implemented with Modal☆32Apr 27, 2026Updated last week