jhuapl-bio / BasestackLinks
Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionformatics tools to a user interface. It is usable on all major Linux distributions, Mac OS, and Windows 10 or later
☆27Updated last year
Alternatives and similar repositories for Basestack
Users that are interested in Basestack are comparing it to the libraries listed below
Sorting:
- Influenza genome analysis Nextflow workflow☆24Updated last week
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Updated last year
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Updated 2 months ago
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- Systematic ProtEin AnnotatoR☆19Updated 4 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆50Updated 5 months ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆65Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 7 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- ☆33Updated 8 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated 4 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆61Updated this week
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Updated 3 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Documentation for analyzing SARS-Cov2 samples.☆11Updated 5 years ago
- ☆26Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- A set of scripts for calculating pairwise SNP distance☆44Updated 3 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Updated 6 years ago
- ☆10Updated 13 years ago