Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionformatics tools to a user interface. It is usable on all major Linux distributions, Mac OS, and Windows 10 or later
☆27Jan 7, 2025Updated last year
Alternatives and similar repositories for Basestack
Users that are interested in Basestack are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification☆13Oct 9, 2025Updated 7 months ago
- ☆23Feb 2, 2026Updated 3 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 6 months ago
- ☆10Apr 16, 2025Updated last year
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- VIGOR4☆22Aug 15, 2025Updated 9 months ago
- Repo for PrimerSchemes☆17Mar 31, 2026Updated last month
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆72May 12, 2026Updated last week
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated last month
- ☆20Apr 9, 2021Updated 5 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆19Mar 25, 2026Updated last month
- Reference-based consensus creation☆61Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Updated this week
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 2 weeks ago
- UPHL's Reference Free Pipeline☆28May 6, 2026Updated last week
- IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.☆24Apr 30, 2026Updated 2 weeks ago
- ☆27Aug 2, 2023Updated 2 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆11Jan 6, 2023Updated 3 years ago
- Portable WDL workflows for CZ ID production pipelines☆51Apr 23, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆92Mar 10, 2026Updated 2 months ago
- 🧬 Unique (& conserved) DNA sequence identification☆19Mar 10, 2026Updated 2 months ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 10 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Database Infrastructure for Mass Spectrometry (DIMSpec) project☆26Jun 27, 2025Updated 10 months ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆15Feb 19, 2026Updated 3 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆41Mar 19, 2026Updated 2 months ago
- ☆27Jun 26, 2025Updated 10 months ago