Alternatives and similar repositories for pyFIt-SNE:

Users that are interested in pyFIt-SNE are comparing it to the libraries listed below

• dkobak / finer-tsne
  Code for the paper on t-SNE with variable degree of freedom
  ☆24Updated 4 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated 2 years ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 5 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆41Updated 2 years ago
• adrianveres / polo
  Python Optimal Leaf Ordering for Hierarchical Clustering
  ☆21Updated 7 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆40Updated 3 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• QData / AttentiveChrome
  NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…
  ☆27Updated 4 years ago
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆97Updated last year
• ramzan1990 / sequence2vec
  ☆21Updated 8 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago
• jaak-s / macau
  Bayesian Factorization with Side Information in C++ with Python wrapper
  ☆41Updated 3 years ago
• ismms-himc / clustergrammer2-notebooks
  Examples using Clustergrammer2 to explore high-dimensional datasets.
  ☆40Updated 4 years ago
• MaayanLab / clustergrammer-widget
  The Clustergrammer interactive Jupyter notebook widget
  ☆47Updated 2 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆48Updated 5 years ago
• pachterlab / MCML
  ☆33Updated 3 years ago
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆12Updated 3 years ago
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 9 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆16Updated last year
• ulfaslak / py_pcha
  Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.
  ☆38Updated 2 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• canzarlab / JVis-learn
  ☆20Updated 3 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• NikolayOskolkov / HowUMAPWorks
  Here I explain the math behind UMAP and show how to program it from scratch in Python
  ☆38Updated 4 years ago
• kundajelab / gkmexplain
  Accompanying repository for GkmExplain paper
  ☆22Updated 4 years ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 6 months ago