Alternatives and similar repositories for pyFIt-SNE

Users that are interested in pyFIt-SNE are comparing it to the libraries listed below

• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆41Updated 4 years ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 6 years ago
• dkobak / finer-tsne
  Code for the paper on t-SNE with variable degree of freedom
  ☆25Updated 5 years ago
• ismms-himc / clustergrammer2-notebooks
  Examples using Clustergrammer2 to explore high-dimensional datasets.
  ☆40Updated 5 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆46Updated last week
• ramzan1990 / sequence2vec
  ☆21Updated 8 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 3 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆46Updated 5 years ago
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆118Updated 2 years ago
• YeoLab / anchor
  Find bimodal, unimodal, and multimodal features in your data
  ☆27Updated 7 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• greenelab / DAPS
  Denoising Autoencoders for Phenotype Stratification
  ☆42Updated 7 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 7 years ago
• adrianveres / polo
  Python Optimal Leaf Ordering for Hierarchical Clustering
  ☆21Updated 8 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆47Updated 5 years ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• kieranrcampbell / ouijaflow
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Updated 8 years ago
• dreamtools / dreamtools
  Code sharing related to DREAM challenges
  ☆24Updated 8 years ago
• BenjaminDoran / unidip
  Python port of the Unidip clustering algorithm from: http://www.kdd.org/kdd2016/subtopic/view/skinny-dip-clustering-in-a-sea-of-noise
  ☆37Updated 2 years ago
• ppsp-team / StratiPy
  Graph regularized nonnegative matrix factorization (GNMF) in Python
  ☆46Updated 5 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆22Updated 2 years ago
• daquang / YAMDA
  Yet Another Motif Discovery Algorithm
  ☆53Updated 6 years ago
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 9 years ago
• sirajulsalekin / DeepSNR
  Base-pair resolution detection of transcription factor binding site by deep deconvolutional network
  ☆10Updated 8 years ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆34Updated 3 years ago
• PMBio / limix
  We have moved to https://github.com/limix/limix.
  ☆23Updated 8 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• ulfaslak / py_pcha
  Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.
  ☆41Updated 4 months ago
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago