Alternatives and similar repositories for dynamicTreeCut:

Users that are interested in dynamicTreeCut are comparing it to the libraries listed below

• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated last year
• IlyaLab / CombiningDependentPvaluesUsingEBM
  Python, R and Matlab implementation of Brown's Method to combine dependent P-values
  ☆25Updated 7 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆68Updated 2 years ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆62Updated 3 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆43Updated 4 months ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆59Updated 4 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• jmschrei / avocado
  Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…
  ☆117Updated 3 years ago
• ShobiStassen / PARC
  ☆42Updated 7 months ago
• bioFAM / slalom
  ☆28Updated 2 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆53Updated 2 years ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆87Updated 2 months ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 6 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• fanzheng10 / HiDeF
  HiDeF (Hierarchical community Decoding Framework)
  ☆14Updated last year
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆43Updated 2 weeks ago
• andreaskapou / BPRMeth
  Modelling DNA methylation profiles
  ☆22Updated 4 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 5 years ago
• pachterlab / MCML
  ☆33Updated 3 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated last week
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆42Updated 6 months ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year