kylessmith / dynamicTreeCutLinks
Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
☆41Updated 4 years ago
Alternatives and similar repositories for dynamicTreeCut
Users that are interested in dynamicTreeCut are comparing it to the libraries listed below
Sorting:
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆97Updated last year
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆120Updated 3 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆66Updated 4 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 6 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Updated 7 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆61Updated 4 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Updated 2 years ago
- Multi-omics factor analysis v2☆56Updated this week
- ☆33Updated 4 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- Python biomart API☆69Updated 2 years ago
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 4 months ago
- Fishers Exact Test for Python (Cython)☆67Updated 10 months ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 6 years ago
- GO enrichment with python -- pandas meets networkx☆88Updated 5 years ago
- Modelling DNA methylation profiles☆24Updated 5 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- Fast Inference of Networks from Directed Regulations☆22Updated 2 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- Computational Biology- Spring 2021☆48Updated 4 years ago