kylessmith / dynamicTreeCut
Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
☆40Updated 3 years ago
Alternatives and similar repositories for dynamicTreeCut:
Users that are interested in dynamicTreeCut are comparing it to the libraries listed below
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- ☆33Updated 3 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆86Updated last month
- A library to simulate single-cell data☆2Updated last year
- HiDeF (Hierarchical community Decoding Framework)☆13Updated last year
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Multi-omics factor analysis v2☆40Updated 3 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Fit generalized linear models in python.☆27Updated last year
- ☆28Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated last year
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated last year
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆44Updated last year
- Infer selection pressures on features of amino acid CDR3 sequences.☆23Updated 9 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated 5 months ago
- ☆42Updated 6 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- Single-cell Hierarchical Poisson Factorization☆67Updated 2 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- Geometry-preserving random sampling☆78Updated 3 months ago
- ☆51Updated last year
- Diverse sampling for single-cell datasets☆16Updated 4 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago