Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.
☆122Mar 17, 2022Updated 4 years ago
Alternatives and similar repositories for avocado
Users that are interested in avocado are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Feb 6, 2023Updated 3 years ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆25Jul 22, 2026Updated last month
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated 2 years ago
- Model zoo for genomics☆175Dec 17, 2025Updated 8 months ago
- ☆16Jan 2, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Biological sequence analysis for the modern age.☆310Updated this week
- Simple and efficient access to genomic data for deep learning models.☆43Jan 9, 2020Updated 6 years ago
- Tissue-specific variant effect predictions on splicing☆44May 23, 2023Updated 3 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Dec 22, 2022Updated 3 years ago
- a framework for training sequence-level deep learning networks☆403Dec 16, 2024Updated last year
- A toolset to analyze genomic footprinting data☆21Jul 28, 2026Updated last month
- Deep learning based processing of Atac-seq data☆137Feb 16, 2023Updated 3 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆31May 11, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Jun 9, 2021Updated 5 years ago
- Convolutional neural network analysis for predicting DNA sequence activity.☆269Sep 14, 2020Updated 5 years ago