Single-cell Analysis of Perturbational Effects using Machine Learning
☆21Oct 9, 2025Updated 11 months ago
Alternatives and similar repositories for scape
Users that are interested in scape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Oct 10, 2024Updated last year
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated 3 weeks ago
- Sample representation benchmark for single-cell data☆15Jun 12, 2026Updated 3 months ago
- factor models for omics data☆47Updated this week
- Codebase for training the SubCell models☆24Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 6 months ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆21Updated this week
- Pareto Task Inference in Python☆23Updated this week
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆37Aug 15, 2026Updated last month
- Benchmarking pipeline for single-cell perturbation prediction tools☆37Jul 11, 2025Updated last year
- ☆68Sep 13, 2024Updated 2 years ago
- Visualising data frames as funky heatmaps 📊, the Python implementation☆27Feb 6, 2025Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆48May 27, 2026Updated 3 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆15Nov 3, 2025Updated 10 months ago
- Hosted version of cellxgene☆22Updated this week
- ☆10Feb 2, 2021Updated 5 years ago
- ☆18Jul 29, 2026Updated last month
- ☆32Jan 22, 2025Updated last year
- Interpret perturbation responses from scRNA-seq perturbation experiments☆19Mar 4, 2025Updated last year
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆16Sep 3, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆36Sep 7, 2026Updated last week
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆63Updated this week
- Fairness in single-cell data☆21Mar 25, 2026Updated 5 months ago
- A benchmark on predicting how small molecules change gene expression in different cell types.☆19Jul 4, 2025Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆26Oct 14, 2025Updated 11 months ago
- Identifying transcription factor binding sites from neural network contribution scores☆25Aug 26, 2026Updated 3 weeks ago
- Automatically annotate cell types, consistently across samples.☆28Updated this week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆188Feb 25, 2025Updated last year
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Single-Cell (Perturbation) Model Library☆129Jul 27, 2026Updated last month
- Python module to analyse CRISPR-based libraries☆16Apr 1, 2021Updated 5 years ago
- ☆14Jun 5, 2024Updated 2 years ago
- ☆19Updated this week
- scDrug: From scRNA-seq to Drug Repositioning☆46May 8, 2023Updated 3 years ago
- ☆12Apr 10, 2026Updated 5 months ago
- Unified knowledge-driven network inference from omics data☆105Aug 7, 2026Updated last month