Fairness in single-cell data
☆21Mar 25, 2026Updated 4 months ago
Alternatives and similar repositories for CellDISECT
Users that are interested in CellDISECT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆122May 15, 2026Updated 2 months ago
- Codebase for training the SubCell models☆24Aug 3, 2026Updated last week
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated last month
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆29Apr 15, 2026Updated 3 months ago
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆62Updated this week
- ☆33Aug 3, 2026Updated last week
- ☆18Apr 23, 2026Updated 3 months ago
- parallel differential expression for single-cell perturbation sequencing☆25Jul 14, 2026Updated 3 weeks ago
- ☆26Jul 15, 2026Updated 3 weeks ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 6 months ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated 10 months ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆25Jul 22, 2026Updated 2 weeks ago
- GENOT: Generative Neural Optimal Transport☆17Dec 18, 2024Updated last year
- Official Implementation of the paper "Variational Control for Guidance in Diffusion Models" accepted at ICML'25☆20Dec 5, 2025Updated 8 months ago
- ☆28Aug 25, 2025Updated 11 months ago
- ☆25Jun 14, 2025Updated last year
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆47May 27, 2026Updated 2 months ago
- Universal Single-Cell Genomics Preprocessing package☆51Jul 29, 2026Updated last week
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆16Apr 30, 2026Updated 3 months ago
- Counterfactual Generative Modeling with Variational Causal Inference (ICLR 2025)☆21Sep 30, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆72Updated this week
- The UKB RAP Imaging and Machine Learning repository contains examples and tools to assist users of the UK Biobank Research Analyses Platf…☆18Dec 16, 2025Updated 7 months ago
- Single-Cell (Perturbation) Model Library☆125Jul 27, 2026Updated 2 weeks ago
- Benchmark gene representations from different model families☆16May 29, 2025Updated last year
- Multigrate: multiomic data integration for single-cell genomics☆34Updated this week
- Pareto Task Inference in Python☆23Updated this week
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆35May 23, 2026Updated 2 months ago
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆20Oct 10, 2024Updated last year
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆11Oct 20, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell Analysis of Perturbational Effects using Machine Learning☆19Oct 9, 2025Updated 10 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- Conveniently process a dictionary of anndatas☆23Apr 17, 2026Updated 3 months ago
- Hosted version of cellxgene☆21Updated this week
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆46Jul 8, 2026Updated last month
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆24Jul 18, 2022Updated 4 years ago
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated last year