Fairness in single-cell data
☆21Mar 25, 2026Updated 5 months ago
Alternatives and similar repositories for CellDISECT
Users that are interested in CellDISECT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆125Updated this week
- Codebase for training the SubCell models☆24Updated this week
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated 2 months ago
- Reproducible analyses for the NicheCompass manuscript☆14Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆31Apr 15, 2026Updated 5 months ago
- scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.☆63Updated this week
- ☆36Aug 3, 2026Updated last month
- ☆18Apr 23, 2026Updated 4 months ago
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated 3 weeks ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆36May 23, 2026Updated 3 months ago
- ☆26Jul 15, 2026Updated 2 months ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆41Jan 10, 2026Updated 8 months ago
- ☆30Apr 13, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated 11 months ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆27Sep 2, 2026Updated 2 weeks ago
- GENOT: Generative Neural Optimal Transport☆19Dec 18, 2024Updated last year
- ☆28Aug 25, 2025Updated last year
- ☆24Jun 14, 2025Updated last year
- Official Implementation of the paper "Variational Control for Guidance in Diffusion Models" accepted at ICML'25☆20Dec 5, 2025Updated 9 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆48May 27, 2026Updated 3 months ago
- Universal Single-Cell Genomics Preprocessing package☆53Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆16Apr 30, 2026Updated 4 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆82Updated this week
- The UKB RAP Imaging and Machine Learning repository contains examples and tools to assist users of the UK Biobank Research Analyses Platf…☆18Dec 16, 2025Updated 9 months ago
- Single-Cell (Perturbation) Model Library☆129Jul 27, 2026Updated last month
- Benchmark gene representations from different model families☆16May 29, 2025Updated last year
- Multigrate: multiomic data integration for single-cell genomics☆35Updated this week
- Pareto Task Inference in Python☆23Updated this week
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆11Oct 20, 2020Updated 5 years ago
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆19Oct 10, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- Single-cell Analysis of Perturbational Effects using Machine Learning☆20Oct 9, 2025Updated 11 months ago
- Conveniently process a dictionary of anndatas☆23Apr 17, 2026Updated 5 months ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆24Jul 18, 2022Updated 4 years ago
- Hosted version of cellxgene☆22Updated this week
- MCP server for Open Targets data☆19May 15, 2026Updated 4 months ago
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆50Sep 2, 2026Updated 2 weeks ago