instadeepai / protein-sequence-bfnLinks
Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
☆46Updated 7 months ago
Alternatives and similar repositories for protein-sequence-bfn
Users that are interested in protein-sequence-bfn are comparing it to the libraries listed below
Sorting:
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- Aligning protein generative models with experimental fitness☆106Updated last month
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks☆30Updated 4 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆58Updated last year
- Official implementation of "Learning the language of protein structures"☆39Updated 3 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆138Updated 5 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆119Updated 6 months ago
- ☆88Updated last week
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 6 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- Protein Design by Machine Learning guided Directed Evolution☆46Updated 6 months ago
- ☆29Updated 11 months ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆78Updated 4 months ago
- Protein Design with Guided Discrete Diffusion☆134Updated last year
- diffusion model for protein sequence generation☆50Updated 2 years ago
- Efficient implementatin of ESM family.☆74Updated 3 weeks ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Updated 2 years ago
- ☆100Updated this week
- ☆58Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆32Updated 2 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆68Updated 2 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 3 months ago
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆24Updated last year
- ML-guided enzyme engineering☆68Updated last month
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆113Updated 4 months ago
- ☆26Updated last year
- Efficient factorized variant of the IPA module.☆30Updated last week
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year