Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
☆53Mar 3, 2025Updated last year
Alternatives and similar repositories for protein-sequence-bfn
Users that are interested in protein-sequence-bfn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Meta in-context learning for protein fitness prediction☆19Feb 7, 2025Updated last year
- AbBFN2: A flexible antibody foundation model based on Bayesian Flow Networks☆40Jun 4, 2025Updated last year
- Library for efficient training and application of Machine Learning Interatomic Potentials (MLIP)☆121Jun 30, 2026Updated 3 weeks ago
- ☆20Nov 21, 2025Updated 8 months ago
- JAX translation of boltz☆30Aug 4, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is the official code release for Bayesian Flow Networks.☆316Jul 18, 2024Updated 2 years ago
- Official repository of ReactZyme☆45Oct 12, 2024Updated last year
- Official PyTorch implementation for "Unifying Bayesian Flow Networks and Diffusion Models through Stochastic Differential Equations"☆41Apr 23, 2024Updated 2 years ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆86Sep 11, 2025Updated 10 months ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated 2 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆49Nov 4, 2025Updated 8 months ago
- 🧬 ManyFold: An efficient and flexible library for training and validating protein folding models☆80Dec 14, 2022Updated 3 years ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆40Mar 22, 2026Updated 3 months ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆16Jun 4, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Codon optimizer for tissue-specific expression☆16Sep 26, 2024Updated last year
- ☆16Feb 14, 2025Updated last year
- Making Protein Language Modeling Accessible to All Biologists☆167Updated this week
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- ☆100Oct 15, 2024Updated last year
- ☆18Oct 29, 2025Updated 8 months ago
- ☆118Jan 3, 2026Updated 6 months ago
- Synthetic Accessibility via Fragment Assembly Generation☆24Jul 3, 2026Updated 2 weeks ago
- ☆16Mar 1, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆16Oct 17, 2024Updated last year
- Baseline model for PPB-Affinity benchmark data☆43May 21, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- A LLM-friendly framework for translating dynamical equations to gymnasium-compatible RL environments.☆33Mar 18, 2026Updated 4 months ago
- Evolutionary Algorithm with Diffusion Models for Protein Design☆31Jan 7, 2026Updated 6 months ago
- Pharmacophore Elucidation with Convolutional Neural Networks and Reinforcement Learning☆18Apr 7, 2025Updated last year
- This API provides authentication and CRUD operations for data used by the Chronas application☆14Jul 12, 2026Updated last week
- ☆114Updated this week
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆32Jul 25, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆92Feb 11, 2026Updated 5 months ago
- A library for deploying App on deepchain.bio☆31Sep 24, 2021Updated 4 years ago
- ☆15May 29, 2024Updated 2 years ago
- Benchmarking and validation of Machine Learning Interatomic Potentials (MLIP)☆15Updated this week
- Python package of codon usage bias analysis tools☆21May 16, 2026Updated 2 months ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 4 months ago