Alternatives and similar repositories for protein-sequence-bfn:

Users that are interested in protein-sequence-bfn are comparing it to the libraries listed below

• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆90Updated 6 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆38Updated 10 months ago
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆16Updated 3 weeks ago
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆52Updated last year
• OpenBioML / protein-lm-scaling
  ☆59Updated last year
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆27Updated 4 months ago
• AI4PDLab / ProtRL
  ☆58Updated 3 weeks ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆55Updated 2 months ago
• zzhangzzhang / pLMs-interpretability
  ☆26Updated 6 months ago
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆40Updated 2 weeks ago
• HeliXonProtein / proximal-exploration
  PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"
  ☆36Updated last year
• MJ10 / BioSeq-GFN-AL
  Code for "Biological Sequence Design with GFlowNets", 2022
  ☆73Updated 2 years ago
• instadeepai / bioclip
  Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs
  ☆24Updated last year
• Bitbol-Lab / ProtMamba-ssm
  ProtMamba: a homology-aware but alignment-free protein state space model
  ☆62Updated 3 weeks ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆55Updated this week
• blt2114 / ProtDiff_SMCDiff
  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…
  ☆73Updated last year
• ngruver / NOS
  Protein Design with Guided Discrete Diffusion
  ☆127Updated last year
• google-deepmind / nuclease_design
  ML-guided enzyme engineering
  ☆60Updated last week
• prescient-design / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆51Updated 10 months ago
• NVlabs / protcomposer
  ☆36Updated last month
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated last year
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆37Updated 3 weeks ago
• aqlaboratory / insilico_design_pipeline
  In-silico design pipeline for evaluating protein structure diffusion models.
  ☆23Updated 10 months ago
• instadeepai / manyfold
  🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
  ☆80Updated 2 years ago
• programmablebio / ptm-mamba
  ☆63Updated 2 weeks ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆75Updated last month
• prescient-design / lobster
  Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
  ☆92Updated last week
• microsoft / protein-transfer
  ☆26Updated 11 months ago
• pemami4911 / ppde
  Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"
  ☆12Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆57Updated 11 months ago