instadeepai / protein-sequence-bfn
Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
☆21Updated 4 months ago
Alternatives and similar repositories for protein-sequence-bfn:
Users that are interested in protein-sequence-bfn are comparing it to the libraries listed below
- Benchmark for Biophysical Sequence Optimization Algorithms☆15Updated 3 months ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆72Updated last year
- 🧬 ManyFold: An efficient and flexible library for training and validating protein folding models☆78Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆52Updated last year
- In-silico design pipeline for evaluating protein structure diffusion models.☆20Updated 7 months ago
- ML-guided enzyme engineering☆41Updated 3 months ago
- Code for the paper https://arxiv.org/abs/2402.04997☆68Updated last year
- ☆42Updated this week
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆35Updated last year
- ☆11Updated 2 months ago
- A Modular Architecture for Deep Learning Systems☆40Updated 4 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 8 months ago
- Protein Design with Guided Discrete Diffusion☆123Updated last year
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆11Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆49Updated 8 months ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆35Updated this week
- ☆57Updated 10 months ago
- Aligning protein generative models with experimental fitness☆84Updated 4 months ago
- ☆31Updated 9 months ago
- Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)☆68Updated 9 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆51Updated last year
- ProtMamba: a homology-aware but alignment-free protein state space model☆56Updated 3 months ago
- Shows some of the ways molecule generation and optimization can go wrong☆16Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆55Updated 9 months ago
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆23Updated 10 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- ☆135Updated 11 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆37Updated 7 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆21Updated last year