wells-wood-research / PDBenchLinks
PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
☆31Updated 2 years ago
Alternatives and similar repositories for PDBench
Users that are interested in PDBench are comparing it to the libraries listed below
Sorting:
- ☆36Updated last year
- ☆71Updated 8 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated last week
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆26Updated last year
- protein structure generation with sparse all-atom denoising models☆50Updated 2 months ago
- ☆30Updated last year
- ☆39Updated last year
- ☆21Updated 2 years ago
- Kuhlman Lab Installation of AlphaFold3☆37Updated 2 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- ☆25Updated 2 years ago
- Structure prediction of alternative protein conformations☆80Updated 9 months ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆77Updated 5 months ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆62Updated last month
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Physical energy function for protein sequence design☆34Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 6 months ago
- ML toolset for creating TED: The Encyclopedia of Domains☆24Updated 6 months ago
- ☆21Updated last year
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆15Updated last week
- ☆119Updated 3 weeks ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 8 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 6 months ago
- Adapting protein language models for structure-conditioned design☆41Updated last year
- ☆20Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- Metrics for our protein design competitions.☆35Updated last year