Alternatives and similar repositories for PDBench:

Users that are interested in PDBench are comparing it to the libraries listed below

• bwicky / oligomer_hallucination
  ☆36Updated last year
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆32Updated 2 years ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆36Updated 4 months ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆21Updated last year
• whitead / protein-emoji
  Files and utilities for protein-emoji
  ☆20Updated 2 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆60Updated last month
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated last week
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆68Updated 2 weeks ago
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆34Updated 5 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆34Updated 4 years ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆29Updated last month
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆26Updated last year
• AbSciBio / igdesign
  ☆29Updated 2 weeks ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆45Updated this week
• bene837 / af2seq
  ☆41Updated 4 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆20Updated 2 weeks ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆20Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆32Updated last year
• ELELAB / RosettaDDGPrediction
  ☆58Updated 2 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆32Updated 4 months ago
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆11Updated 5 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆65Updated 5 months ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆34Updated 2 years ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆51Updated 2 months ago
• LPDI-EPFL / topobuilder
  Parametric Building of de novo Functional Topologies
  ☆44Updated 2 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆41Updated 11 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆31Updated 2 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆72Updated 5 months ago
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆55Updated 3 months ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆32Updated 3 years ago