OpenBioML / protein-lm-scalingLinks
☆58Updated last year
Alternatives and similar repositories for protein-lm-scaling
Users that are interested in protein-lm-scaling are comparing it to the libraries listed below
Sorting:
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆101Updated 9 months ago
- Protein structure datasets for machine learning.☆111Updated 2 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆121Updated this week
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆121Updated 2 years ago
- ☆34Updated last week
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆43Updated 9 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆114Updated 4 months ago
- Aligning protein generative models with experimental fitness☆99Updated 2 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆127Updated 3 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆61Updated last month
- Dataset and package for working with protein-protein interactions in 3D☆94Updated 2 months ago
- Official implementation of "Learning the language of protein structures"☆36Updated 3 weeks ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆180Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆49Updated last year
- MSA Transformer reproduction code☆83Updated 3 years ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated 9 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Updated 2 years ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated 11 months ago
- Protein Design with Guided Discrete Diffusion☆132Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- ☆58Updated 8 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆157Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆79Updated last month
- Generative Language Modeling for Antibody Design☆157Updated 9 months ago
- Improved antibody structure-based design using inverse folding☆127Updated 2 months ago