prescient-design / walk-jumpLinks
Official repository for discrete Walk-Jump Sampling (dWJS)
☆57Updated last year
Alternatives and similar repositories for walk-jump
Users that are interested in walk-jump are comparing it to the libraries listed below
Sorting:
- ☆65Updated 2 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Updated 2 years ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- Protein Design with Guided Discrete Diffusion☆133Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆105Updated 11 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆99Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 2 weeks ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆77Updated last year
- Aligning protein generative models with experimental fitness☆105Updated last month
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆80Updated last year
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- Official implementation of "Learning the language of protein structures"☆38Updated 2 months ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- ☆107Updated 2 years ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆45Updated 9 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated 8 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆136Updated 5 months ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆124Updated 2 years ago
- Pose checks for 3D Structure-based Drug Design methods☆88Updated 10 months ago
- Multi-Scale Representation Learning on Proteins (NeurIPS 2021)☆48Updated 2 years ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆32Updated last month
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆61Updated last year
- ☆92Updated 11 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆69Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 3 months ago
- Official repository of EnzymeFlow☆94Updated 9 months ago