helicalAI / helicalLinks
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
☆120Updated this week
Alternatives and similar repositories for helical
Users that are interested in helical are comparing it to the libraries listed below
Sorting:
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆263Updated this week
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆197Updated this week
- RNA-seq prediction with deep convolutional neural networks.☆152Updated 2 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆157Updated 2 weeks ago
- A data framework for biology.☆170Updated this week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆174Updated last year
- Biological sequence analysis for the modern age.☆223Updated 3 weeks ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆69Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆59Updated 2 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆116Updated 7 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆56Updated 2 weeks ago
- Genomic Pre-trained Network☆268Updated 2 months ago
- ☆74Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆75Updated last year
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆65Updated 4 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆53Updated 3 years ago
- Arc Virtual Cell Atlas☆295Updated last month
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆38Updated last month
- ☆315Updated 2 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆128Updated 3 months ago
- ☆68Updated last week
- Models and datasets for perturbational single-cell omics☆152Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated 3 months ago
- An AI Agent for Fully Automated Multi-omic Analyses☆184Updated 7 months ago
- ☆34Updated last month
- ☆29Updated 4 months ago
- ☆46Updated this week
- code to run sei and obtain sei and sequence class predictions☆105Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆119Updated 2 years ago