lucidrains / enformer-pytorchLinks
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
β527Updated 2 months ago
Alternatives and similar repositories for enformer-pytorch
Users that are interested in enformer-pytorch are comparing it to the libraries listed below
Sorting:
- Foundation Models for Genomics & Transcriptomicsβ701Updated 2 months ago
- 𧬠Generative modeling of regulatory DNA sequences with diffusion probabilistic models π¨β411Updated 2 weeks ago
- Sequential regulatory activity predictions with deep convolutional neural networks.β452Updated 4 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomeβ417Updated last month
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyenaβ719Updated 4 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasksβ124Updated 10 months ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genomeβ695Updated 2 months ago
- Genomic Pre-trained Networkβ279Updated this week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.β270Updated last week
- Benchmarks for classification of genomic sequencesβ157Updated last month
- A repository with exploration into using transformers to predict DNA β transcription factor bindingβ86Updated 3 years ago
- β324Updated last year
- RNA-seq prediction with deep convolutional neural networks.β197Updated 3 weeks ago
- β586Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell levβ¦β179Updated 2 years ago
- β325Updated 3 months ago
- β284Updated last year
- β547Updated 5 months ago
- Graph-linked unified embedding for single-cell multi-omics data integrationβ425Updated 2 weeks ago
- Get protein embeddings from protein sequencesβ496Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)β303Updated 3 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction β¦β473Updated 2 weeks ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbationsβ291Updated 7 months ago
- Pretraining infrastructure for multi-hybrid AI model architecturesβ184Updated 2 months ago
- Single cell perturbation predictionβ315Updated 9 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joβ¦β181Updated last year
- a framework for training sequence-level deep learning networksβ385Updated 9 months ago
- Implementation of ProteinBERT in Pytorchβ161Updated 4 years ago
- Biological sequence analysis for the modern age.β249Updated this week
- An implementation of the DeepMind's AlphaFold based on PyTorch for researchβ399Updated 4 years ago