lucidrains / enformer-pytorchLinks
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
☆539Updated 4 months ago
Alternatives and similar repositories for enformer-pytorch
Users that are interested in enformer-pytorch are comparing it to the libraries listed below
Sorting:
- Foundation Models for Genomics & Transcriptomics☆734Updated 2 weeks ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆457Updated 6 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆435Updated 3 months ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆717Updated 4 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆127Updated last year
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆735Updated 7 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆299Updated 3 weeks ago
- Genomic Pre-trained Network☆306Updated last week
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆421Updated last month
- Benchmarks for classification of genomic sequences☆164Updated 3 months ago
- RNA-seq prediction with deep convolutional neural networks.☆204Updated 2 months ago
- ☆335Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆310Updated 9 months ago
- ☆335Updated 6 months ago
- ☆297Updated last year
- ☆559Updated 7 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆182Updated 2 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆87Updated 3 years ago
- ☆593Updated last year
- Get protein embeddings from protein sequences☆503Updated 2 years ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆454Updated last week
- Implementation of ProteinBERT in Pytorch☆162Updated 4 years ago
- ☆369Updated 9 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆473Updated 2 weeks ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆433Updated last week
- Single cell perturbation prediction☆325Updated 11 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆186Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆317Updated 5 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆224Updated 8 months ago
- ☆353Updated this week