[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
☆485Jan 1, 2026Updated 4 months ago
Alternatives and similar repositories for DNABERT_2
Users that are interested in DNABERT_2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆129Jan 1, 2026Updated 4 months ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆748Jan 22, 2026Updated 3 months ago
- Foundation Models for Genomics & Transcriptomics☆864Feb 24, 2026Updated 2 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆785Apr 22, 2025Updated last year
- GENA-LM is a transformer masked language model trained on human DNA sequence.☆226Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Benchmarks for classification of genomic sequences☆174Aug 14, 2025Updated 9 months ago
- Genomic Pre-trained Network☆341Mar 25, 2026Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆131Oct 31, 2024Updated last year
- [ICML 2024] BiSHop: Bi-Directional Cellular Learning for Tabular Data with Generalized Sparse Modern Hopfield Model☆12Mar 2, 2026Updated 2 months ago
- Biological foundation modeling from molecular to genome scale☆1,508Mar 20, 2026Updated 2 months ago
- [ICML 2024] Outlier-Efficient Hopfield Layers for Large Transformer-Based Models☆23Mar 30, 2026Updated last month
- ☆46Sep 13, 2023Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆104Mar 3, 2025Updated last year
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆480May 12, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆564Jul 7, 2025Updated 10 months ago
- ☆26Jun 5, 2025Updated 11 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆20Aug 13, 2025Updated 9 months ago
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Apr 2, 2025Updated last year
- Effect of tokenization on transformers for biological sequence☆23Dec 31, 2025Updated 4 months ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Jun 19, 2023Updated 2 years ago
- ☆26Dec 15, 2025Updated 5 months ago
- RNA-seq prediction with deep convolutional neural networks.☆239Aug 28, 2025Updated 8 months ago
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32May 12, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆234Mar 18, 2026Updated 2 months ago
- ☆50Mar 22, 2026Updated last month
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- Pretraining infrastructure for multi-hybrid AI model architectures☆232Feb 20, 2026Updated 3 months ago
- ☆26Nov 7, 2023Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆53Jan 19, 2026Updated 4 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆369May 27, 2025Updated 11 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆323Apr 14, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,078Feb 7, 2024Updated 2 years ago
- Taxonomic classification of DNA sequences☆57Jul 2, 2024Updated last year
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆54Apr 9, 2026Updated last month
- [NeurIPS 2023] On Sparse Modern Hopfield Model☆57Mar 26, 2024Updated 2 years ago
- Genome modeling and design across all domains of life☆3,890Mar 20, 2026Updated 2 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆431Mar 7, 2024Updated 2 years ago