MAGICS-LAB / DNABERT_2
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
☆278Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for DNABERT_2
- DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆75Updated 6 months ago
- RNA foundation model☆208Updated 7 months ago
- Genomic Pre-trained Network☆191Updated last month
- 🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics☆479Updated last month
- Benchmarks for classification of genomic sequences☆119Updated 9 months ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆600Updated 8 months ago
- ☆260Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆226Updated this week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆157Updated 8 months ago
- ☆266Updated 3 months ago
- ☆278Updated 11 months ago
- Bilingual Language Model for Protein Sequence and Structure☆184Updated last month
- Foldseek enables fast and sensitive comparisons of large structure sets.☆831Updated last week
- ☆166Updated this week
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆431Updated last month
- ☆218Updated this week
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆354Updated this week
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆226Updated 3 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆210Updated 3 months ago
- Official repository for the ProteinGym benchmarks☆239Updated 3 weeks ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆165Updated this week
- A generative latent variable model for biological sequence families.☆209Updated 2 years ago
- ☆37Updated 11 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆384Updated 8 months ago
- ☆178Updated 8 months ago
- Deep functional residue identification☆304Updated last year
- ☆32Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆96Updated 3 weeks ago
- RNA-seq prediction with deep convolutional neural networks.☆89Updated 3 weeks ago
- A deep learning-based tool to identify splice variants☆409Updated 8 months ago