MAGICS-LAB / DNABERT_2Links
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
☆417Updated last month
Alternatives and similar repositories for DNABERT_2
Users that are interested in DNABERT_2 are comparing it to the libraries listed below
Sorting:
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆695Updated 2 months ago
- Genomic Pre-trained Network☆279Updated this week
- Nature Methods: RNA foundation model (together with RhoFold)☆303Updated 3 months ago
- Foundation Models for Genomics & Transcriptomics☆701Updated 2 months ago
- Benchmarks for classification of genomic sequences☆157Updated last month
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆113Updated 7 months ago
- RNA-seq prediction with deep convolutional neural networks.☆197Updated 3 weeks ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆392Updated this week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆181Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆270Updated last week
- ☆43Updated 2 years ago
- The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.☆299Updated 3 weeks ago
- ☆282Updated last year
- ☆355Updated 7 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆124Updated 10 months ago
- ☆586Updated last year
- ☆324Updated last year
- Sequential regulatory activity predictions with deep convolutional neural networks.☆450Updated 4 months ago
- An AI Agent for Fully Automated Multi-omic Analyses☆193Updated 10 months ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆254Updated 3 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆92Updated last month
- ☆547Updated 5 months ago
- ☆325Updated 3 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,060Updated 2 weeks ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆527Updated 2 months ago
- The ViennaRNA Package☆358Updated last month
- A deep learning-based tool to identify splice variants☆460Updated 2 months ago
- Automatically exported from code.google.com/p/cdhit☆695Updated 2 years ago
- The LinearDesign mRNA design software.☆190Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆291Updated 7 months ago